Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0062 ATGGCTCACCATTGTTCAAACAAGGCCTTAGGTTGCTACCTCCTATTTTCCATTGTTGTGTCTATCTTTTCAACCTTTACTTGTGCTCATTTTGATGGATTTTTCCCTAATGAACCAATAATATTCCAAGACACTAATGCTTATGCACCAACACTTGAAGTTGATGTTATTGAACCAACTCTAAAAATTGAAGATGATTCACAACTTGCTCCACCACCTGTAGTTGGTGCCATTCCACCAACTTTCGAAGTTCAAAATGATGCACCACTTCTAAATGAAAGGCTAAAAAAGGCCTATGTTGCTCTTCAAGCATGGAAAGAGGCTATTTACTCTGACCCTTTGAACACAACCGGTAATTGGGTTGGTGAAGATGTTTGCTCCTACAACGGTGTGTTTTGTGCTCCCGCCATTGATGATCCCACATTGAATGTGGTTGCTGGTATTGATCTCAACAACGCAGACATTGCCGGTCATCTCCCAGAAGAGTTAGGCAACTTGTTAGATATTGCACTTTTCCACATTAACTCCAATAGATTTTGTGGAATTGTGCCTGAGACGTTGGAGAATCTTACACTTCTATATGAGTTTGACATTAGCAACAATCGCTTTGTTGGTGGTTTTCCATCTGTGGTTCTCAAATTGCCAAACTTGAAGTACTTGGATATCAGATACAATGACTTTGAAGGACCTTTACCTCCAAAGCTATTTGAGAATGATCTTGATGCAATATTTATGAACAACAATCGTTTCACATCTATCATCCCAGATACTCTTGGAAAATCCAAGGCCTCGGTTGTGACCTTTGCTAACAACAAATTCACAGGTTGCATTCCAAAGTCTATTGTGAACATAAAAAACATGAATGAGATTGTGTTCACGGGCAATGACCTTGGAGGTTGCTTGCCACAAGAGATTGGAATGTTAGAAAGTGTAACTGTTTTGGATGCTAGCCATAATGGGTTTATAGGGACTCTTCCTAACTTGTCAGGATTGAAGAATGTCGAGGTCATAAACATTGAGCACAACAAGCTTAGTGGATATGTGTCTAACACTGTTTGCCAACTTCCTTTGTTGAAGAACTTCACATTCTCTAACAACTACTTTAATGGGGAAGCTCAAGCTTGTGTGCCTTCTTCCAATTCATTGGTGGCTTTGGATGACTCAAAAAATTGCTTATCAGGAAGGAAGAATCAAAAGTCATCCAAGCAATGTTTTCCATTGCTAACTCGCCTTGTGGATTGTAGCAAACATTGTGGTAGAGGCAAAGGTAATGACAATGGGAGTACTTTATCACCTTCACCTGTCCCAAAACCACCTAAGTCTAACCCTCCAAAGCTCGAGACACCAAAAGCTCAACCACCTCCAACCCCAAAGGTTGAGCCACCTCCAACACCAAAGGTTGTACATTCACCACCACCCCCCGTGTCCTCACCACCACCACCAATCCACTCCCCACCACCACCAATCCACTCTCCACCTCCACCAAAACTTGTTCTCTCTCCACCACCACCTGCTTACTCACCTCCTCCTCCTATCAACTCCCCACCTCCTCCTATCAACTCCCCACCTCCACCAGTCCATTCTCCTCCACCACAAACATCAGTTCTCTCTCCACCTCCCCTAATACATTTTCCATCACCACCAGTTCACTCACCTCCTATGCCATTACATTCTTCACCACCACCTGTTCACTCACCTCCTCCTCCTATCAACTCCCCACCTCCACCAGTTCATTCTCCTCCACCACCAACACAAGTTCTCTCTCCACCTCCCCTAATACATTTTCCATCACCACCAGTTCACTCACCTCCTCCTCCAGTTCACTCCCCACCACCACCAGTTCACTCACCTCCTATTCCAGTACATTCTTCACCACCACCTGTTCACTCACCTCCTCCTCCTCCTATCAACTCCCCACCTCCACCAATCAATTCTCCACCTCCACCAGTCCATTCTCCTCCACCACCAACACCAGGTCTCTCTCCACCTCCCCCAGTACATTTTCCATCACCTCCAGTTCACCCACCTCCTCCTCCAGTCCACTCCCCACCACTACCAGTTCACTCACCTCCTCTTCCAGTCCATACTCCACCACCACCAGTTTACTCTCCACCTCCACCAATCCATTCCCCACCACCACCAGTTTACTCTCCCCCACCACCAACATGGGATGATGTTGTCCTCCCACCACACTTTGGATCTGCATACTCGTCGCCTCCTCCTCCAACAATTGATGGCTACTAA 2244 0.4554 MAHHCSNKALGCYLLFSIVVSIFSTFTCAHFDGFFPNEPIIFQDTNAYAPTLEVDVIEPTLKIEDDSQLAPPPVVGAIPPTFEVQNDAPLLNERLKKAYVALQAWKEAIYSDPLNTTGNWVGEDVCSYNGVFCAPAIDDPTLNVVAGIDLNNADIAGHLPEELGNLLDIALFHINSNRFCGIVPETLENLTLLYEFDISNNRFVGGFPSVVLKLPNLKYLDIRYNDFEGPLPPKLFENDLDAIFMNNNRFTSIIPDTLGKSKASVVTFANNKFTGCIPKSIVNIKNMNEIVFTGNDLGGCLPQEIGMLESVTVLDASHNGFIGTLPNLSGLKNVEVINIEHNKLSGYVSNTVCQLPLLKNFTFSNNYFNGEAQACVPSSNSLVALDDSKNCLSGRKNQKSSKQCFPLLTRLVDCSKHCGRGKGNDNGSTLSPSPVPKPPKSNPPKLETPKAQPPPTPKVEPPPTPKVVHSPPPPVSSPPPPIHSPPPPIHSPPPPKLVLSPPPPAYSPPPPINSPPPPINSPPPPVHSPPPQTSVLSPPPLIHFPSPPVHSPPMPLHSSPPPVHSPPPPINSPPPPVHSPPPPTQVLSPPPLIHFPSPPVHSPPPPVHSPPPPVHSPPIPVHSSPPPVHSPPPPPINSPPPPINSPPPPVHSPPPPTPGLSPPPPVHFPSPPVHPPPPPVHSPPLPVHSPPLPVHTPPPPVYSPPPPIHSPPPPVYSPPPPTWDDVVLPPHFGSAYSSPPPPTIDGY* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0062 747 PRINTS Proline rich extensin signature 426 438 - -
Gso20g0062 747 PRINTS Proline rich extensin signature 441 457 - -
Gso20g0062 747 PRINTS Proline rich extensin signature 462 474 - -
Gso20g0062 747 PRINTS Proline rich extensin signature 474 495 - -
Gso20g0062 747 PRINTS Proline rich extensin signature 495 511 - -
Gso20g0062 747 Pfam Leucine rich repeat N-terminal domain 100 133 IPR013210 -
Gso20g0062 747 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 86 450 - -
Gso20g0062 747 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 449 548 - -
Gso20g0062 747 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 586 656 - -
Gso20g0062 747 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 610 694 - -
Gso20g0062 747 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 655 745 - -
Gso20g0062 747 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 538 634 - -
Gso20g0062 747 MobiDBLite consensus disorder prediction 432 726 - -
Gso20g0062 747 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 86 450 - -
Gso20g0062 747 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 610 694 - -
Gso20g0062 747 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 538 634 - -
Gso20g0062 747 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 655 745 - -
Gso20g0062 747 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 586 656 - -
Gso20g0062 747 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 449 548 - -
Gso20g0062 747 MobiDBLite consensus disorder prediction 420 747 - -
Gso20g0062 747 Gene3D Ribonuclease Inhibitor 264 417 IPR032675 -
Gso20g0062 747 Gene3D Ribonuclease Inhibitor 96 263 IPR032675 -
Gso20g0062 747 SUPERFAMILY L domain-like 100 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0062 Gso-Chr20 806494 808931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0062 1 417 Trihelix Transcription Factor Family AT3G19020 57.109 2.76e-168 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0062 - - gmx:100804536 916.376