Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0060 ATGCCTCGCCCTTGTTTCCACAAGCTTGTTCTCCCCACTACTCTCCAATCCAGACAACTGAGGATTCCAGATAATTTTCTGAGGAAATATGGGACCCAGCTTTCTACAATTGCTACCCTCACTGTTCCTGATGGTAGTGTTTGGCGTATAGGATTGAAAAAAGCAGACAACAGAATTTTGTTTGTTGATGGTTGGCAAGATTTTGTTCAACACTACTCCATTGGTGTTGGATACTTCTTGGTGTTCATGTATGAAGGGAATTCATCCTTCATTGTTCATATTTTTAATTTGAGTACCTCTGAGGTAAACTATCAATCGGCCATTAGAAACCGTAATGAAGGATCTTGCTTGGCCAATTATCATCATATTTTTGATGAAATGGAAGATGTAGACTCCCTTGATTTGTCGGATTTGTCACCTCAGTACCTTACTCCTGGTTCATTGCAAAACAAGGGTTGTGTTGGATCTGTCGATCAACTGACACCTGGGAAGAGTCATACTCCAGCTTTGCAGAATTTGTTCAATGGTGGATCAAAACTCAACCGCATAAACTGGGGTGATGGTGGGAGTGCTTTTTCTTCGAAGAATGCCAATTCACAAGGCAATCAGTCAACCAGAGACATAGGTGTTCAGTTTAATGCTAATGAGTTTAAAAGGTCCACTGAAGAATTGAAATTGCGTTATTCTAACGAGGAAACAGTTAATAAAACTGCAAAAAAGAAGCGAAAATCAGAGCCCTATGGGGAGGAACCCTCTGGTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGGTTTTATGAAAGTGCATCTGCAAGGAAAAGAACCGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGCATCAAAAACATTTGAACCAACTAATCCTTTCTGCCGAGTTGTCCTGCGACCCTCCTATTTGTATAGGGGATGCATAATGTATCTGCCTTCCTGCTTTGCTGAAAAGAATTTGAATGGGGTTTCGGGATTCATCAAACTTCAGTTGTCCAACGGTAGACAGTGGTCTGTTCGCTGCCTCTATAGGGGAGGTCGAGCCAAGTTAAGCCAAGGTTGGTTTGAATTCACAGTGGAGAACAATTTGGGAGAAGGTGACGTCTGTGTGTTTGAGCTCCTTAGAACGAAGGAAGTTGTGCTGCAAGTTACGGTATTTCGCGTAACCGAGGATGCAGGGTTGTTGAACCAGCCTCCTATGATGCAGCAGCAGCATATCCCAAATATGAGCCACACTAAACTCTTGAACCCTCACTTGCAGCATCGCGTCAGTACTACCAAATTGATTAGAAATTAG 1308 0.4251 MPRPCFHKLVLPTTLQSRQLRIPDNFLRKYGTQLSTIATLTVPDGSVWRIGLKKADNRILFVDGWQDFVQHYSIGVGYFLVFMYEGNSSFIVHIFNLSTSEVNYQSAIRNRNEGSCLANYHHIFDEMEDVDSLDLSDLSPQYLTPGSLQNKGCVGSVDQLTPGKSHTPALQNLFNGGSKLNRINWGDGGSAFSSKNANSQGNQSTRDIGVQFNANEFKRSTEELKLRYSNEETVNKTAKKKRKSEPYGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKTFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVTVFRVTEDAGLLNQPPMMQQQHIPNMSHTKLLNPHLQHRVSTTKLIRN* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0060 435 CDD B3_DNA 296 391 IPR003340 GO:0003677
Gso20g0060 435 MobiDBLite consensus disorder prediction 232 250 - -
Gso20g0060 435 SUPERFAMILY DNA-binding pseudobarrel domain 291 392 IPR015300 -
Gso20g0060 435 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Gso20g0060 435 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 425 - -
Gso20g0060 435 MobiDBLite consensus disorder prediction 232 259 - -
Gso20g0060 435 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Gso20g0060 435 Gene3D - 1 99 IPR015300 -
Gso20g0060 435 Gene3D - 275 395 IPR015300 -
Gso20g0060 435 ProSiteProfiles B3 DNA-binding domain profile. 298 393 IPR003340 GO:0003677
Gso20g0060 435 SMART B3_2 6 98 IPR003340 GO:0003677
Gso20g0060 435 SMART B3_2 298 393 IPR003340 GO:0003677
Gso20g0060 435 CDD B3_DNA 4 96 IPR003340 GO:0003677
Gso20g0060 435 PANTHER B3 DOMAIN-CONTAINING 1 425 - -
Gso20g0060 435 Pfam B3 DNA binding domain 301 391 IPR003340 GO:0003677
Gso20g0060 435 Pfam B3 DNA binding domain 8 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0060 Gso-Chr20 785480 791214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0060 1 397 B3 DNA Binding Superfamily AT3G18990 49.020 5.21e-126 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso20g0060 B3 1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0060 - - gmx:100789352 855.514