Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0058 ATGAGCACCACCGAGAGTCAAAGATATAAGGGCACAGTGAAATGGTTCAACGAGGAGAAGGGTTTCGGTTTCATAACTCCCGAAGATGGTGGCTCTGATCTCTTCGTTCACTACAGTGCGATCCAAACCGACGGCGGCTTCCGCACCTTGTCGGAGGGTCAGTCAGTAGAGTTCCTCGTCACTCAGGACGACAGCGGGCGAGCCGCGGCCGTCAACGTGACGACCACCACGGTTAAATCTAGTGACAGCGGTAACGGGGAAAACTCTGGTGGTGATGCTGCCAATGTTGAGAAATAA 297 0.5354 MSTTESQRYKGTVKWFNEEKGFGFITPEDGGSDLFVHYSAIQTDGGFRTLSEGQSVEFLVTQDDSGRAAAVNVTTTTVKSSDSGNGENSGGDAANVEK* 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0058 98 SUPERFAMILY Nucleic acid-binding proteins 4 75 IPR012340 -
Gso20g0058 98 ProSiteProfiles Cold-shock (CSD) domain profile. 8 75 IPR002059 GO:0003676
Gso20g0058 98 MobiDBLite consensus disorder prediction 75 98 - -
Gso20g0058 98 PANTHER GLYCINE-RICH PROTEIN 2-LIKE 1 82 - -
Gso20g0058 98 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 82 - -
Gso20g0058 98 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Gso20g0058 98 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Gso20g0058 98 PRINTS Cold shock protein signature 48 66 IPR002059 GO:0003676
Gso20g0058 98 Pfam 'Cold-shock' DNA-binding domain 10 75 IPR002059 GO:0003676
Gso20g0058 98 Gene3D - 1 74 IPR012340 -
Gso20g0058 98 MobiDBLite consensus disorder prediction 75 90 - -
Gso20g0058 98 CDD CSP_CDS 9 74 IPR002059 GO:0003676
Gso20g0058 98 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Gso20g0058 98 SMART csp_8 10 76 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0058 Gso-Chr20 771780 772551 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gso20g0058 CSD 8.2e-28 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0058 - - gsj:114402365 187.578