Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0053 ATGGGGACACAAAAGTCTAATATGTTTGATGCACCTTTCAAATACATGGTGCCTGAAGATAAGGAAATTCCCGACAGACCTTTGCCATCACATTGGACTCCTTCTATGCAGGCATATAACACTTCTGGGTCTACTCCAACTCCCTTTTTAAATCAACAGGCAGCTGGTTCTCACATGCCTCTCTACATGTGGGTAAATCAGGTAAACAACACACTACTTCAATCCGATGCTTTGCATGATCCAAGGATGCTCTCCAGTAAACCCACAGTAGCTGGGGATTTTCCTTCAACTAAGAAGCAGCACTGTAATTTGATGCTTGAAAATGCAAGTTCAACCAAACTGAATCAGGATTTGGAGACAGGCCTAGATGCATCTGACGCTAATGCTCAACTTGTAAATTTGGAAAAGGATGAAATAAGAAGAGAAAGAAAAAGACAGTCAAACAGGGAATCGGCGAGGAGATCAAGGATGCGGAAAGAGAAAGAATGTGAAGAGCTACATAAACAAATGGAAATGCTTAAGGATGAAAACTCCGTGCTCACACAGAGGCTCAAGAGTCTTTCTGAGGAGTGCCTGGAGATCTGCAATGAAAACGATGCCATCGAGGAAGAGCTGATTAAAATGTATGGACCAGAATCAATAGCAGATCTATTGCTCTTCAAGCCTACCTGA 672 0.4241 MGTQKSNMFDAPFKYMVPEDKEIPDRPLPSHWTPSMQAYNTSGSTPTPFLNQQAAGSHMPLYMWVNQVNNTLLQSDALHDPRMLSSKPTVAGDFPSTKKQHCNLMLENASSTKLNQDLETGLDASDANAQLVNLEKDEIRRERKRQSNRESARRSRMRKEKECEELHKQMEMLKDENSVLTQRLKSLSEECLEICNENDAIEEELIKMYGPESIADLLLFKPT* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0053 223 Coils Coil 129 204 - -
Gso20g0053 223 PANTHER BZIP TRANSCRIPTION FACTOR 92 223 - -
Gso20g0053 223 PANTHER BZIP TRANSCRIPTION FACTOR 1 93 - -
Gso20g0053 223 PANTHER G-BOX-BINDING FACTOR 3-RELATED 92 223 IPR044827 GO:0003700|GO:0006355|GO:0043565
Gso20g0053 223 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 93 IPR044827 GO:0003700|GO:0006355|GO:0043565
Gso20g0053 223 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 138 190 IPR004827 GO:0003700|GO:0006355
Gso20g0053 223 CDD bZIP_plant_GBF1 141 191 IPR045314 GO:0003700|GO:0006355
Gso20g0053 223 MobiDBLite consensus disorder prediction 139 161 - -
Gso20g0053 223 Gene3D - 139 196 - -
Gso20g0053 223 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 143 158 IPR004827 GO:0003700|GO:0006355
Gso20g0053 223 SUPERFAMILY Leucine zipper domain 139 194 IPR046347 GO:0003700|GO:0006355
Gso20g0053 223 Pfam bZIP transcription factor 137 193 IPR004827 GO:0003700|GO:0006355
Gso20g0053 223 SMART brlzneu 136 200 IPR004827 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0053 1 90 bZIP Transcription Factor Family AT4G36730 31.959 7.09e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso20g0053 bZIP_1 6.7e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0053 K09060 - gmx:102665715 261.536