Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0046 ATGGATCAAGTTGCTCCTCCTCCGATTCTCATGCACCGCAAGCGCGATCTCTCCTACGCCGTCGTTTCGCCTGCTCCCAACCCGAGCTGGAGCTGGGACTGGGACAGCGTGCGTTTCGCCGGCAAACCACCGCCACCACTCTCCTCCCCAAACGACGACGTCGTTTTTGAGGAGAGTGTTGCGCCGCCTCTGCAGTTAAACCTCGGGGGAAGGACGAACAACAGCAACAGCAACAAGAGAGTTAGGTCAGGGTCCCCCGGAACGTCGTCGTATCCGATGTGCCAGGTGGACAACTGCAGAGAGGATCTGTCGAAGGCGAAGGACTATCACCGGAGACACAAGGTGTGTGAGGCTCATAGCAAGGCCTCCAAAGCGCTTCTCGCGAATCAAATGCAAAGATTCTGCCAGCAGTGTAGCAGGTTTCATCCTCTCTCGGAGTTTGATGAGGGGAAGCGGAGCTGCCGCCGGAGACTCGCCGGACACAACCGGCGCCGGCGGAAGACGCAGCCCGAGGATGTTACCTCGGCGACTCCCGCGCCAGCCGCCGCCGCGAATTTGGAAATCTTCGACTTGTTGACTGCCATAGCTGGAGCTTCGCAGGGAAAATTTGAGGAAAAAAGGTCACAAGTACCGGTTAGAGAGCAGCTTGTTCAGATTCTCAACAGGATACCTTTGCCTGCAGATCTTGCAACCAAGTTGCTGGATGCTGGCAGTGGCAATGTTAATGGGAAAAAAGATCAAGTGCAATTGCAGACACCATCCTCCTATCAACGTCACGAGTCTCATGACCAACTGAACCACACCCCGGCTGCCCCATTAACTATGGACTTGCTTGCTGTTCTTTCCACCACTCTTTCTGGGGGGTCTGCCCCTGATGCCAGTGCGTCGCCCTCTCAAAACCACAGCTGCAACAGTGATGGTGGCAGTGCTGACCAGACGAGACAACAGCAATTCTTTTCGGTTGGTGGGGAAAGAAGCAGTAGCAGTTCCCGGTCTCCGGTTGAAGATTCAGACTGTCAGGAGGATGTTCGTGTTAATTTACCACTGCAACTCTTTAGCTCCTCACCGGAAGATGACAGCCTGCCTAAACTAGCATCTTCTAGAAAGTATTTCTCGTCTGACAGTAGTAACCCTGCTGAAGAGAGGTCCCCATCGTCTTCTCCTGTTGTGGAGATGCTGTTTGATTTGCAGGGTGGGGCTAGAGGTCTCAAGCCAGAGAGCATATCCTCTGGAAGAGAAGTTATTGCTAATAAGGAAGCTAGCCAAAGTCATAGTTCTAATATCTCTCTTGATTTGTTTAAAGGGTCAAATAACAGGATCCAACAACCTAGTTCACTTCAAAGTGTTCCATTTCAAGCTGGGTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGCACTGGGAGAATAATGTTTAAACTATTTGACAAGCATCCCAGCCATTTCCCAGGAACACTGAGAGCACAGATTTACAATTGGCTATCTAATAGGCCATCAGACATGGAGAGCTACATACGGCCTGGTTGTGTGGTCCTATCAATTTATGCTTCAATGTCTTCTGCTGACTGGGAGAAACTAGAAGAAAACTTCCTTCAACATGTTCATTCTTTAATTCAAAATTCAGATTCCGATTTTTGGAGAAATGGAAGGTTTCTAGTTCATTCTGGCAGTCAGTTTGTTTCACACAAAGATGGGAAGATACGCATATGCAAACCATGGAGAACATGGAAGTCACCAGAGTTGATATCTGTGTCCCCTTTGGCAATTGTTAGTGGACAGGAAACCTCTATTTCATTGAAGGGTAGAAACCTGTCAACTCCAGGCACAAAGATTCACTGTACAGGTACCGGCTCTTACGCATCGGCAGAAGTAATAGGATCTGCATATTCTGGTGTGATGTATGATAAGATAAAGTTGAGTGCTTTTAAAGTTCAGGATGTATCGCATGGTGTTCTGGGTCGCTGTTTTATTGAGGTTGAAAATGGTTTCAAGGGCAACAGTTTTCCAGTGATAATAGCTGATGAGACCATTTGCAAGGAATTGAGACCACTTGAGTCTGAATTTGACGAGGAGGAAAAAATATGTGATGCCATTTCAGAGGAGCATGAACATCATTTTGGAAGGCCAAGATCAAGGGAGGAGGCTTTGCATTTCTTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGATTCTCATATGTGCATGAGGTTCCATATTATTCGCTTGACAGGTTCAAATTTGTACTCACATTTGCTGTGGAAAGAAACTGTTGCATGCTAGTCAAAACCCTTCTGGATGTGCTGGTTGGTAAACACTTGCAAGGGGAATGGTTGTCAACAGGGTCAGTGGAGATGTTGAATGCAATCCAACTCTTAAATAGAGCAGTGAAAGGAAAGTACGTTGGCATGGTTGATTTGCTCATCCACTATTCTATACCAAGCAACAATGGTACATCCAGGAAATACGTATTTCCACCGAATCTTGAGGGTCCTGGTGGTATTACACCCTTGCACTTGGCAGCATGCACATCTGGTTCTGAGAGTGTCGTTGACTCTTTAACAAGTGACCCACAGGAGATTGGGTTGAAGTGTTGGGAATCCCTTGTGGATGCAAACGGACAGACTCCACATGCCTATGCCATGATGAGGAATAATGACTCATATAATGCGCTGGTTGCCCATAAACTTGCTGATAGACGAAGGGGTGAAATTTCGGTAACAATTGAGAATGCGATAGAGCAACAGTCACTGAGAGTGGAGCTTAAAGAAAAGCAAAGTAACTTAGTCAAACGTGGTCAGAGTTCTTGTGCCAAGTGTGCGAATGCAGAATTTCGCTTCAACAGAAGAGTTCCAGGTTCACACGGTTTGCTTCACCGCCCCTTTATTTATTCAATGCTAGCTGTTGCAGCTGTTTGTGTATGTGTTTGCGTGTTCTTCCGTGGACGCCCTTTTGTTGGCTCAGTTGCTCCCTTCAGTTGGGAAAATCTGGATTATGGCACAATGTAA 3030 0.4733 MDQVAPPPILMHRKRDLSYAVVSPAPNPSWSWDWDSVRFAGKPPPPLSSPNDDVVFEESVAPPLQLNLGGRTNNSNSNKRVRSGSPGTSSYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATPAPAAAANLEIFDLLTAIAGASQGKFEEKRSQVPVREQLVQILNRIPLPADLATKLLDAGSGNVNGKKDQVQLQTPSSYQRHESHDQLNHTPAAPLTMDLLAVLSTTLSGGSAPDASASPSQNHSCNSDGGSADQTRQQQFFSVGGERSSSSSRSPVEDSDCQEDVRVNLPLQLFSSSPEDDSLPKLASSRKYFSSDSSNPAEERSPSSSPVVEMLFDLQGGARGLKPESISSGREVIANKEASQSHSSNISLDLFKGSNNRIQQPSSLQSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPGTLRAQIYNWLSNRPSDMESYIRPGCVVLSIYASMSSADWEKLEENFLQHVHSLIQNSDSDFWRNGRFLVHSGSQFVSHKDGKIRICKPWRTWKSPELISVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGTGSYASAEVIGSAYSGVMYDKIKLSAFKVQDVSHGVLGRCFIEVENGFKGNSFPVIIADETICKELRPLESEFDEEEKICDAISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYVHEVPYYSLDRFKFVLTFAVERNCCMLVKTLLDVLVGKHLQGEWLSTGSVEMLNAIQLLNRAVKGKYVGMVDLLIHYSIPSNNGTSRKYVFPPNLEGPGGITPLHLAACTSGSESVVDSLTSDPQEIGLKCWESLVDANGQTPHAYAMMRNNDSYNALVAHKLADRRRGEISVTIENAIEQQSLRVELKEKQSNLVKRGQSSCAKCANAEFRFNRRVPGSHGLLHRPFIYSMLAVAAVCVCVCVFFRGRPFVGSVAPFSWENLDYGTM* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0046 1009 MobiDBLite consensus disorder prediction 238 267 - -
Gso20g0046 1009 MobiDBLite consensus disorder prediction 286 389 - -
Gso20g0046 1009 MobiDBLite consensus disorder prediction 347 384 - -
Gso20g0046 1009 MobiDBLite consensus disorder prediction 441 471 - -
Gso20g0046 1009 SUPERFAMILY Ankyrin repeat 756 903 IPR036770 -
Gso20g0046 1009 Gene3D - 84 155 IPR036893 GO:0003677|GO:0005634
Gso20g0046 1009 Gene3D - 751 938 IPR036770 -
Gso20g0046 1009 MobiDBLite consensus disorder prediction 65 92 - -
Gso20g0046 1009 MobiDBLite consensus disorder prediction 286 334 - -
Gso20g0046 1009 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 30 1009 - -
Gso20g0046 1009 MobiDBLite consensus disorder prediction 66 92 - -
Gso20g0046 1009 MobiDBLite consensus disorder prediction 158 179 - -
Gso20g0046 1009 Pfam SBP domain 94 167 IPR004333 GO:0003677
Gso20g0046 1009 SUPERFAMILY SBT domain 92 172 IPR036893 GO:0003677|GO:0005634
Gso20g0046 1009 MobiDBLite consensus disorder prediction 242 259 - -
Gso20g0046 1009 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 1009 IPR044817 GO:0003677
Gso20g0046 1009 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0046 Gso-Chr20 630704 636498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0046 1 1009 SBP-box Gene Family AT1G20980 52.345 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso20g0046 SBP 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0046 - - gmx:100812180 1979.91