Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0044 ATGGGTAGTTGTGGAAGAGAAGGTGTAGTGAGGCAGTATATAAGATCAAAGGTTCCTCGTTTAAGATGGACCCCTGAGCTTCATCGTTGCTTTGTTTATGCCATTGAAACCCTTGGAGGTCATCACAAGGCTACTCCTAAGCTTGTTCTTCAACTGATGGATGTTAAAGGGCTCACAATTTCACACGTCAAGAGCCATCTGCAGATGTACAGAAGCATGAAAGGTGACTCGTGCAGACAAGATAGGACTTCTACCCAACATAGGAAACAATCTTTTCAGAAGCATGATGAAGCGAGTGATGTTGGTTTTCACTCTTGCTTCAAATTCATTAGAAAAGAATCTGATTCCCTCTCCGGCTACAGTAATTTCTCCTCAAAAAGAACTAGAATCGAGAAGACAAGTTTACTCTCAGGAATCCTACAATGCAGCCAAAGAATATGTGAAGCAGATCCAAATCCATACACTACTTTTTATGATTACCTGCAGAGCATGGCTAAGGAGAAGGGAATAAAGAAGATTTGTGTTGGTTCAATATGGCAGCAGACTCAACCCCTTTCCACAACCTTTCATATGCTAACAAAGCAAGAATCAGATTTGCTCCAGGTTGCCAAATTAAATGATAAGCAGCCTTTGAATGAAGTAGGGAACACTTGGAGAAAAGGACTAGGAGCAGAGAATGAAGACATAGGAGGTTGTGAATTGTCATTGTCAATCACATTGCCACAACCCCATCCTTCCTCACAGAAAAGTAATACTTCTTCAGTCAGTGAGACCAGTGAGGCATTTTCATTGTGCCCTGAGTTTAGCAACAACGTTATCATGGGCTGTTCTAGTTCTTCCAATGTCCCAAAAACAATTAATTTGGACCTTTCTTTGGCCATTTGA 885 0.4124 MGSCGREGVVRQYIRSKVPRLRWTPELHRCFVYAIETLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMKGDSCRQDRTSTQHRKQSFQKHDEASDVGFHSCFKFIRKESDSLSGYSNFSSKRTRIEKTSLLSGILQCSQRICEADPNPYTTFYDYLQSMAKEKGIKKICVGSIWQQTQPLSTTFHMLTKQESDLLQVAKLNDKQPLNEVGNTWRKGLGAENEDIGGCELSLSITLPQPHPSSQKSNTSSVSETSEAFSLCPEFSNNVIMGCSSSSNVPKTINLDLSLAI* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0044 294 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 187 294 - -
Gso20g0044 294 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 167 - -
Gso20g0044 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 73 IPR006447 GO:0003677
Gso20g0044 294 MobiDBLite consensus disorder prediction 77 96 - -
Gso20g0044 294 Gene3D - 18 74 - -
Gso20g0044 294 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Gso20g0044 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Gso20g0044 294 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Gso20g0044 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 167 IPR044848 GO:0003700
Gso20g0044 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 187 294 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0044 Gso-Chr20 608088 612673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0044 1 71 G2-like Transcription Factor Family AT1G14600 73.684 1.68e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso20g0044 Myb_DNA-binding 1.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0044 - - gmx:100796564 598.971