Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0043 ATGGCAGCACCTTTTTCTGCAGCATCGCTCTTTGCAATCAGAGAAGAGGATCAGAATCAGATGAAGCAGCAGCATTCCTCAACACCATCATCATCAACCACTCCAGCTGCACCACCACCCCAGAAGAAAAGAAGAAACCAACCAGGAACACCATATCCAGATGCTGAGGTGATAGCACTATCTCCCAAGACTCTAATGGCAACAAACAGGTTTATATGTGAAGTGTGCAATAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAGCAAAAGACCAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAGGCACACTCCAAAACCTGTGGCACTAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGAAGAGACAGTTTCATCACACACAGAGCCTTCTGTGATGCTTTGGCACAAGAAAGTGCAAGAGAGGCACCAAACCTGAGCAGTGCCATTGGCAACCAACTGTATGGAAACAGCAACAACATGTCCTTAGGCTTATCTCAAATCCCTTCCATCCATGACCAAAACCCTCAACCTAGTGAACTAATGCGTTTTAGTGGTGCGCCAAGGGCTGGTCAATTTGACCACATTCTCCCACCCAACATTGCCTCATCATCACCCTTTAGACATTCCATGCAAACCCCTCCATTCTTCTTGCAAGAATCAAACCAAACCTACCATGACTCAAACAAGCCATTCCAAGGACTGATACAATTATCTGACCTAAACAACAATAACCCTTCTGCCTCCAACCTCTTCAACCTTCCTTTTCTTTCCAACCGTGCCATCAACAGCAACAACTATTCTGAGGAACAACAATTCAACACTGCTGAAGGGTCCAATTTCTTCTCAGAAGGCACCATGAATATTGGCAGTACTGATCACCAAACTAGCTCCACCACTGTCCCTTCTCTCTTCAGCACCAATTCCCTTCAAAACAACCACCTTTCTCACATGTCCGCAACTGCACTGCTTCAAAAAGCTTCTCAAATTGGCTCTGCAAGTTCAAGCAACAGCATCAACATCAACAACACCACCACCACCAACAACACTAGTGCCTCCTCTCTTCTTAGAAGCTTAGCATCAAAATCTGATCATCAGAGGCAACTCGGTGGTGGTGGTGCTGCTGCAAACTATGCAACCATCTTCAACAACAGTGTTCAGGAAATGATGAACATTTCAGGGTTTGAAGCATATGATCATCATGGTGGCATGAACAAAGAACAAAAACTCGGTGGTGTTGGAGGCTCTGATAGGCTCACAAGGGACTTTCTAGGAGTTGCACAACAACAACAGCGAGAAGGGTTTAACTTGATGAGTTCTTTGGAAGCAGAGACAAACAATAACGCTGCGCCGTCAGGTCAATCTTTTGGAAGTGGTGGGAACTTTCAGTGA 1581 0.4554 MAAPFSAASLFAIREEDQNQMKQQHSSTPSSSTTPAAPPPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESAREAPNLSSAIGNQLYGNSNNMSLGLSQIPSIHDQNPQPSELMRFSGAPRAGQFDHILPPNIASSSPFRHSMQTPPFFLQESNQTYHDSNKPFQGLIQLSDLNNNNPSASNLFNLPFLSNRAINSNNYSEEQQFNTAEGSNFFSEGTMNIGSTDHQTSSTTVPSLFSTNSLQNNHLSHMSATALLQKASQIGSASSSNSININNTTTTNNTSASSLLRSLASKSDHQRQLGGGGAAANYATIFNNSVQEMMNISGFEAYDHHGGMNKEQKLGGVGGSDRLTRDFLGVAQQQQREGFNLMSSLEAETNNNAAPSGQSFGSGGNFQ* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0043 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Gso20g0043 526 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Gso20g0043 526 SMART c2h2final6 147 167 IPR013087 -
Gso20g0043 526 SMART c2h2final6 112 142 IPR013087 -
Gso20g0043 526 SMART c2h2final6 71 93 IPR013087 -
Gso20g0043 526 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Gso20g0043 526 Gene3D Classic Zinc Finger 125 205 - -
Gso20g0043 526 MobiDBLite consensus disorder prediction 397 416 - -
Gso20g0043 526 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 492 - -
Gso20g0043 526 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Gso20g0043 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 492 - -
Gso20g0043 526 MobiDBLite consensus disorder prediction 1 54 - -
Gso20g0043 526 Gene3D Classic Zinc Finger 54 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0043 Gso-Chr20 588995 597108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0043 41 491 IDZ Gene Family AT2G02070 49.704 1.25e-127 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso20g0043 zf-C2H2_jaz 3.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0043 K25870 - gmx:100818072 962.6