Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0042 ATGGCTTCTGCTTCCTCATCCACACCCTTCTTGGGAATCAGACAAGAAAATCAAAGTCACGTTACACAACAGCAACAACACCAATCCTCTACTACTGCTGCTTCCTCTACTACTACTACTAGTGCTACTCCAACCACAGTGCCTCAAAAGAAAAGGAGGAATCAACCCGGAACACCATATCCAGATGCTGAGGTGATAGCACTATCTCCAAAGACTCTAATGGCAACAAACAGGTTTATATGTGAAGTGTGCAATAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAGCAAAAGACCAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAGGCACATTCTAAAACCTGTGGCACTAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGACAGTTTCATAACTCATAGGGCATTTTGTGATGCTCTAGCACATGACAGTGCAAGACACCCTTCAAGCCTGAACCCTTTGGGAACTCATCATTTGTATGGCACAAACCACATGAGCCTAGGCCTTAGTGCTCAGCTTCAGAACCACCAAGCAGCTACTAACAGCATATTGAGCCTTGGAAGTGCACCAAAGTTTGAGCACTTAATCTCACCAAATCTGCACCACTCACCATCATCATTTGGAGTGCAATCACCACCACCACCACCCCAGTCATCATCATTCTTCATGACTGATCCAAACCAAGCATTTCAAGACCTCCAATCTCAGAACCAAGGACACTTATTCTCAAACAAGCAACTTCATGGTCTCATGCAACTCCCTGATCTTCAAGGAACCACCAATATCAATTCCACTACTTCTGCTTCATCAGTGTCTGGTTCAGCTAACAACACCAATCTCTTCAACCTAAGCTTCTTCCCTAACACCAACGCCAGTGGAAGCATAATCAATGATCAATTCAGCAACATGACTGGAGTTACTAATAATAACCAAGGAACAGCAACACTCTACAGTACTAATAGCCCTGTGAATAGTAACCAAGTTGGTTTGTCTTCACTCTTTGGAAACTCATCAGTGCAACAAGATAACATGTCCCCTCACATGTCAGCCACTGCTTTGCTTCAGAAAGCTGCACAAATGGGTTCAACCACAACCACCAATGAGTTAGGTATGAGATCAAGCATGGAGGATGATGAGCACAGCAACCATCTACGTGGGTTGATGAACTCTTTTGTCAATGGAAACAACCTTGGTCAGTTTCACAACGTGGTGGAGGAGCCTAAGAAGATGCCACAAAACAACAACCTTGGTTTGTGCTTTGGAGGGTCTGATAAGTTGACCTTGGACTTTTTGGGTGTTGGGGGAATGGTGAGGAACATGAACAATGGTGGAGGGTTTTCACAAAGAGAGCAACAACAACAACAACACTCCATGGGAATTACTATGAGCCCCTTGGATCCTAAATTGGAATCAGCGAAAGCAAACCAACACTATGGAACCTCAACACTCTAA 1650 0.4455 MASASSSTPFLGIRQENQSHVTQQQQHQSSTTAASSTTTTSATPTTVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHDSARHPSSLNPLGTHHLYGTNHMSLGLSAQLQNHQAATNSILSLGSAPKFEHLISPNLHHSPSSFGVQSPPPPPQSSSFFMTDPNQAFQDLQSQNQGHLFSNKQLHGLMQLPDLQGTTNINSTTSASSVSGSANNTNLFNLSFFPNTNASGSIINDQFSNMTGVTNNNQGTATLYSTNSPVNSNQVGLSSLFGNSSVQQDNMSPHMSATALLQKAAQMGSTTTTNELGMRSSMEDDEHSNHLRGLMNSFVNGNNLGQFHNVVEEPKKMPQNNNLGLCFGGSDKLTLDFLGVGGMVRNMNNGGGFSQREQQQQQHSMGITMSPLDPKLESAKANQHYGTSTL* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0042 549 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Gso20g0042 549 MobiDBLite consensus disorder prediction 269 290 - -
Gso20g0042 549 Gene3D Classic Zinc Finger 133 211 - -
Gso20g0042 549 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 448 517 - -
Gso20g0042 549 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 460 - -
Gso20g0042 549 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Gso20g0042 549 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 460 - -
Gso20g0042 549 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 448 517 - -
Gso20g0042 549 MobiDBLite consensus disorder prediction 507 549 - -
Gso20g0042 549 MobiDBLite consensus disorder prediction 507 527 - -
Gso20g0042 549 Gene3D Classic Zinc Finger 62 127 - -
Gso20g0042 549 MobiDBLite consensus disorder prediction 1 63 - -
Gso20g0042 549 MobiDBLite consensus disorder prediction 1 53 - -
Gso20g0042 549 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Gso20g0042 549 Pfam Zinc-finger double-stranded RNA-binding 79 101 IPR022755 -
Gso20g0042 549 SMART c2h2final6 79 101 IPR013087 -
Gso20g0042 549 SMART c2h2final6 120 150 IPR013087 -
Gso20g0042 549 SMART c2h2final6 155 175 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0042 Gso-Chr20 579493 584944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0042 10 512 IDZ Gene Family AT2G02070 46.749 1.90e-134 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso20g0042 zf-C2H2_jaz 3.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0042 K25870 - gmx:102663407 1010.75