Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0041 ATGAAGCCAGAGTTGTACGAAATCTCCGACGACGAATGGGAGAACCACTCCTTCAAACCCTCGCAAGTTCTGAAGCGGCCTCGCACTTCGTCTCCTCCTTCTCCGCCACCCATCGAATCCTTCGCTTACACCTCCAACTCCAAGGTCGACGTTTCAAGCGAAAACGACGACGACAGCGATTGCGTCGAAATCGCGCCGGAATCCGCTAATTTCCGCGACAATCTCAACGACCTCGAGGACGCTGACGTGGACGACGAACCGGTACCGGCGTCCCGCGGCCGGAGGTTCGTAATCGACGACGACGACGAGGAAGACGGTGAGGAGGAGAACGGGGGAAGGGATGGACACGTGGCGGAATTGTATGATGTTGAGTCGAGCGAGGAGGAAGAGGAAGACGTTGATGAATTGAACGAGAACGACGTTGTTGGAAGGGCTTTGCACAAGTGCGCGCGAATCTCCGCAGAGTTGAAGGGCGAACTCTTCGGTTCCTCCGGGACCGCGTGCGAGAGGTATTCCGAGGTGGAATCTTCGTCAGTGAGGATTGTGACTCAGGAGGATGTTGACGTTGCGTGCGGGTCTGAGGAGGATTCGGATTTTCAGCCTCTGCTCAAGCCGTATCAGTTGGTTGGCGTCAATTTTTTGCTTCTCTTGTATCGGAAGGGGATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGCAAAACAGTTCAGGCCATCACATATTTAACTTTGCTGAAACACTTGCACAATGATTCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTCTGGAAAACTGGGAAAGGGAATTAAAAAGGTGGTGTCCATCCTTTTCTGTTCTTCAATACCATGGGGCCGGACGTGCAGCTTACTGCAAGGAGTTGAACTCCCTGTCCAAGGCGGGATTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTCGAACGACACAGTGCACAGCAGAAAGATGATCGCAAAATCCTGAAGCGGTGGAGGTGGAGCTGTGTGATAATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCAAGAAATGCGAACCAACGCTTGATGCTGACAGGGACACCACTTCAGAATGATCTGCATGAGTTATGGTCATTGTTGGAGTTTATGCTGCCTGATATTTTTGCTTCTGAAGATGTTGACCTGAAAAAGTTATTAAATGCAGAAGATAGAGATTTAATTGGTCGTATGAAGTCCATCTTAGGGCCATTTATTTTACGGCGACTGAAATCTGATGTGATGCAACAACTTGTTCCAAAAATACAGCAGGTTGAATATGTTATAATGGAAAAGCAGCAGGAAACTGCTTACAAGGAAGCCATTGAAGAGTATCGTGCTGTGTCACAAGCTCGGATGGCAAAATGTTCTGATCTTAATTCAAAAAGTGTTCTTGAAGTTCTTCCTCGACGACAGATAAACAACTATTTTGTTCAGTTTCGCAAGATAGCAAACCATCCCTTGTTAATAAGGCGAATCTACAGTGACGAGGATGTCATTCGCTTTGCTAGGAAGCTACATCCGATGGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATAGAGGAGCTTAAAAACTACAATGACTTCTCTATTCACCGGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGGATCCTTCCAGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCAGAACTTCTTCCTTCACTAAAGGAGGGTGGTCATCGAGCCTTGATCTTTAGTCAATGGACTTCAATGCTTGACATATTGGAGTGGACTTTGGATGTCATTGGATTGACCTATAAACGGCTTGATGGAAGTACACAGGTAGCGGAGAGGCAAACAATAGTTGATACGTTCAATAACGATACTTCAATTTTTGCATGCTTACTTTCCACAAGAGCTGGTGGACAGGGCTTAAATTTAACAGGAGCTGATACAGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGACAAGCCGAAGATCGTTGCCATCGAATTGGTCAAACAAAGCCTGTAACCATACATCGGCTGGTGACAAAGGGAACGGTTGATGAAAATGTGTACGAGATTGCAAAAAGAAAGCTAGTATTAGATGCTGCTGTTCTCGAGTCCATGGAGGAGATTAATGAAGGTGAATTGCCCGAGAAGACCATGGGAGAGATATTGTCTGCAATTTTATTGAGTTAA 2259 0.4564 MKPELYEISDDEWENHSFKPSQVLKRPRTSSPPSPPPIESFAYTSNSKVDVSSENDDDSDCVEIAPESANFRDNLNDLEDADVDDEPVPASRGRRFVIDDDDEEDGEEENGGRDGHVAELYDVESSEEEEEDVDELNENDVVGRALHKCARISAELKGELFGSSGTACERYSEVESSSVRIVTQEDVDVACGSEEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKHLHNDSGPHLIVCPASVLENWERELKRWCPSFSVLQYHGAGRAAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVIMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVIMEKQQETAYKEAIEEYRAVSQARMAKCSDLNSKSVLEVLPRRQINNYFVQFRKIANHPLLIRRIYSDEDVIRFARKLHPMGAFGFECTLDRVIEELKNYNDFSIHRLLLHYGVNDRKGILPDKHVMLSAKCRALAELLPSLKEGGHRALIFSQWTSMLDILEWTLDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIHRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEINEGELPEKTMGEILSAILLS* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0041 752 MobiDBLite consensus disorder prediction 1 136 - -
Gso20g0041 752 MobiDBLite consensus disorder prediction 85 99 - -
Gso20g0041 752 Gene3D - 439 514 IPR027417 -
Gso20g0041 752 PANTHER SNF2/RAD54 HELICASE FAMILY 62 750 - -
Gso20g0041 752 Pfam SNF2-related domain 223 509 IPR000330 GO:0005524|GO:0140658
Gso20g0041 752 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 62 750 - -
Gso20g0041 752 CDD DEXHc_Snf 203 396 - -
Gso20g0041 752 Pfam Helicase conserved C-terminal domain 579 691 IPR001650 -
Gso20g0041 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 733 IPR027417 -
Gso20g0041 752 SMART ultradead3 199 404 IPR014001 -
Gso20g0041 752 CDD SF2_C_SNF 569 702 - -
Gso20g0041 752 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 216 394 IPR014001 -
Gso20g0041 752 Gene3D - 203 438 IPR038718 -
Gso20g0041 752 MobiDBLite consensus disorder prediction 1 21 - -
Gso20g0041 752 SMART helicmild6 608 691 IPR001650 -
Gso20g0041 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 429 IPR027417 -
Gso20g0041 752 Gene3D - 565 747 IPR027417 -
Gso20g0041 752 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 582 749 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0041 Gso-Chr20 558419 567175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0041 224 730 RAD5 or RAD16-like Gene Family AT5G22750 27.157 1.22e-48 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso20g0041 SNF2_N 1e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0041 K14439 - gmx:100806323 1426.38