Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0040 ATGGGGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAAGAAGGGGCCTTCTCGCATAAGTGCCACCATTGTTACATTCTATGCATTGATTCTTGTCATGCTTGTGTTTATCCTGTTTGTTACATACAGACATTGGTCCAACAGGACAAGACTTCAACCAGAGAGCTATATATCAGTCTCTGAGGATGAAAATACATCTGTGGAATCCAAAAAATCTGATCTACCTGGATATGCTGTTGTAATTACCTCTAAAGGTTCTATTATAGTAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGGATGCTTTTTCACCAAGTAATTAAACACTATATAATTCAGGCAGGTCATAACAAAGGGCCTGGAGCTACTGAAGATTGGAACCTGTTAGGAAAGAAATACGCAAGTATGAGACACGAAGCATTCATGCTCGGAACATCGAAGGGAAAATACTTTAACAAAGGATTTGATCTTTTCATCACAACTGCACCAATACCAGATTTAAATGAAAAGCTTATTGTGTTTGGCCGAGTCATCAAGGGACAGGATATTGTTCAGGAAATTGAAGAAGTGGATACAGATGAACATTACCAACCAAAACTTACTATTGGGATACTTGATGTGGCTCTTAAACAGATAGTGTGA 693 0.3882 MGRIKPQALLQQSKRKKGPSRISATIVTFYALILVMLVFILFVTYRHWSNRTRLQPESYISVSEDENTSVESKKSDLPGYAVVITSKGSIIVELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYIIQAGHNKGPGATEDWNLLGKKYASMRHEAFMLGTSKGKYFNKGFDLFITTAPIPDLNEKLIVFGRVIKGQDIVQEIEEVDTDEHYQPKLTIGILDVALKQIV* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0040 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Gso20g0040 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Gso20g0040 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 185 IPR002130 GO:0000413|GO:0003755
Gso20g0040 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Gso20g0040 230 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 88 226 IPR002130 GO:0000413|GO:0003755
Gso20g0040 230 SUPERFAMILY Cyclophilin-like 78 225 IPR029000 -
Gso20g0040 230 Gene3D - 64 229 IPR029000 -
Gso20g0040 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 230 - -
Gso20g0040 230 CDD cyclophilin 85 223 - -
Gso20g0040 230 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 83 224 IPR002130 GO:0000413|GO:0003755
Gso20g0040 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0040 Gso-Chr20 548166 552718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0040 79 226 U-box Gene Family AT5G67530 27.742 1.45e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0040 - - gmx:100796043 454.136