Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0039 ATGAATTCTCTCTTTTCGCCGGAAAACCTTCCTCCACCACCGGGAATCCCAATCCCCGCCACAATTGCCGCCGCCAGCACCACCACCCCAAACCCAATTCTAATCCCAAAGCTGGAACCTTTCGATGAATGGCTCAACACCCACACACCCCAACAACAGCAACAATCTCAGGACCCCAATTCTTCAAATGGGTCCCTCGACCTCGACCTTAAGCTCTTCGGCGACGAAACCCCCGAAGATTTCTCCGGCGACCCTAACTTGCTCTCCGACTTCAACCGTCTCTCTCAGCTTTTCAGAACCGCTTTCTCCAACAACAACGCCGTTCCCGACCCCATCACCCAAGGGATCCAGCAGCTCGGAAACGACGCCGTTTCCAACCCCTTTGCCAAACCCCCCCAAAACGAAACCACCGTGGTTCCACCGCCGAGCTTCCAAAACGGCACCGTTTCGGACCCCGGGATGCTGCTGCAGCAGCAGCAGCAGTATCCGAACGGCGCCGTTTCAGACCCAGATTCGCGGGCAATTGTGCCGGTCCCGGAGGACGGGCGGTCCTCCTCGGTGGCGGTCACCACGCCGCGGCAGCCGCGGCGCTGCAAAGAGCTGGTCCGCCTGATGGATGTCGGCGGGCCGGAGCAGCGTCACTTCCGGGACGTGGTCCGGCGGACGAGGATGCTTTACGACTCCCTTCGCGTCCTGGCGACGGTGGAGGACGAGGGCCGGGTGGATGCCCGGCGGGGGCGCAGCGATTTGCGTGCCTCGGCGGTGATGAGGAACTGTGGCCTGTGGCTGAACCGTGACAAGAGAATTGTTGGTGCAATTCCCGGTGTCTGCATTGGTGATGTGTTCCTTTATAGGATGGAGTTGTGTGTTGTTGGCCTTCATGGTCAGCCTCAGGCTGGGATTGATTATCTCCCTGCCAGCATGAGTTCCAATGGTGAACCAATTGCCACTAGTGTCATTGTTTCTGGTGGTTATGAGGATGATGTTGATGAGGGTGATGTTATCATTTACTCTGGCCACGGTGGCCAGGACAAGCATTCTAGGCAGGTTTTCCACCAGAAGCTTGAGGGGGGAAATCTTGCAATGGAGAGGAGTATGCACTATGGGATTGAGGTCAGGGTTATTCGTGGGGTGCGGTATGAGGGTGCTGCCTCTGCTACCGGGAGGTTGTATGTGTATGATGGGTTGTATAGGATTCATGAGTGCTGGTTTGATGTGGGGAAGTCGGGTTTCGGGGTTTATAAGTATAAGCTGTGTAGGATTGATGGGCAGGCTAAGATGGGGACTGTGGTGATGAAGGAGGCGCTTATGCTTAGGAAGGATCCCTTGAGTTTCAAACCCATGTGTTGTTTGTCTCTTGATGTTTCGAATAGGAAGGAAAATGTGGCCATTCGGCTTTTTAACGACATTGATCGTAACTATGACCCTCTGCAGTATGAGTATCTTGTGAAGACAAATTTTCCGCAGTTTGTCTTTCATCAGAGTGGGAGGGGGACGGGTTGTGAGTGTGTGGATGGGTGTGTTGAGGGGTGCTTTTGTGCTATGAAGAATGGAGGGGATTTTCCTTATAATCAGAGTGGGATTCTCTTGAGAGGGAAGCCTTTGGTTTTTGAGTGTGGCCCGTTTTGTCATTGTCCTCCTCATTGTCGAAACCGTGTCACGCAGAAGGGGTTGAAAAATAGGTTGGAAGTGTTTAGATCTAGGGAAACTGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAAGCTGGTGCTTTTATATGTGAGTACACGGGGGTTGTTCTCACTAGGGATCAAGCACAGCTTTTGACAATGAATGGTGATTCGTTGATATATCCGAATCGGTTTACTGATAGGTGGGCAGAATGGGGGGACTTATCTATGATTGACTCCAATTATGTGCGTCCATCGTATCCGTCAATACCTCCTTTGGATTTTGCTATGGATGTGTCAAGAATGAGGAATGTTGCTTGCTATATGAGTCATAGTTCGACTCCCAATGTGTTGGTTCAGTTTGTTCTCTATGATCACAATAATTTGATGTTCCCTCACCTTATGCTATTTGCGATGGAGAGCATCCCTCCGATGAGAGAGCTCAGCCTTGATTATGGGGTAGCTGATGAGTGGACAGGAAAGCTCTCTATAGGTAACTGA 2151 0.5184 MNSLFSPENLPPPPGIPIPATIAAASTTTPNPILIPKLEPFDEWLNTHTPQQQQQSQDPNSSNGSLDLDLKLFGDETPEDFSGDPNLLSDFNRLSQLFRTAFSNNNAVPDPITQGIQQLGNDAVSNPFAKPPQNETTVVPPPSFQNGTVSDPGMLLQQQQQYPNGAVSDPDSRAIVPVPEDGRSSSVAVTTPRQPRRCKELVRLMDVGGPEQRHFRDVVRRTRMLYDSLRVLATVEDEGRVDARRGRSDLRASAVMRNCGLWLNRDKRIVGAIPGVCIGDVFLYRMELCVVGLHGQPQAGIDYLPASMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKHSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRYEGAASATGRLYVYDGLYRIHECWFDVGKSGFGVYKYKLCRIDGQAKMGTVVMKEALMLRKDPLSFKPMCCLSLDVSNRKENVAIRLFNDIDRNYDPLQYEYLVKTNFPQFVFHQSGRGTGCECVDGCVEGCFCAMKNGGDFPYNQSGILLRGKPLVFECGPFCHCPPHCRNRVTQKGLKNRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTRDQAQLLTMNGDSLIYPNRFTDRWAEWGDLSMIDSNYVRPSYPSIPPLDFAMDVSRMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMESIPPMRELSLDYGVADEWTGKLSIGN* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0039 716 Pfam SET domain 571 703 IPR001214 GO:0005515
Gso20g0039 716 ProSiteProfiles Pre-SET domain profile. 499 557 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso20g0039 716 SMART preset_2 452 544 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso20g0039 716 MobiDBLite consensus disorder prediction 112 192 - -
Gso20g0039 716 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 119 715 IPR025794 GO:0016571
Gso20g0039 716 Gene3D SET domain 429 716 IPR046341 -
Gso20g0039 716 SMART G9a_1 266 424 IPR003105 -
Gso20g0039 716 ProSiteProfiles SET domain profile. 560 703 IPR001214 GO:0005515
Gso20g0039 716 SUPERFAMILY SET domain 444 704 IPR046341 -
Gso20g0039 716 MobiDBLite consensus disorder prediction 48 67 - -
Gso20g0039 716 MobiDBLite consensus disorder prediction 1 24 - -
Gso20g0039 716 MobiDBLite consensus disorder prediction 48 85 - -
Gso20g0039 716 Pfam Pre-SET motif 456 552 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso20g0039 716 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 31 713 - -
Gso20g0039 716 Pfam SAD/SRA domain 270 424 IPR003105 -
Gso20g0039 716 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 31 713 - -
Gso20g0039 716 SMART set_7 560 709 IPR001214 GO:0005515
Gso20g0039 716 ProSiteProfiles YDG domain profile. 271 420 IPR003105 -
Gso20g0039 716 Gene3D - 268 428 IPR036987 -
Gso20g0039 716 MobiDBLite consensus disorder prediction 112 167 - -
Gso20g0039 716 SUPERFAMILY PUA domain-like 252 434 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0039 Gso-Chr20 537211 546329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0039 216 705 Su(var)3-9 homologs AT5G04940 38.710 3.34e-103 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso20g0039 SAD_SRA 1.2e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0039 K11420 - gmx:100795514 1431.77