Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0027 ATGGACAATAAATCAGATCAGAAAGTATATTATGTTCGTACTGCTGCACTTCTACTTCAACATAACGATGAGAAGCAAGTGAGTGCAAAAGAGCAGACGAGAGAGATGGGGTTGATGAAGAGATTAAGGATAAGAGAAAATATGAGTGGTCTCCGACATGTTATTGCTGGTGCTACTGCTGTGCCCCCTCTCCGAATTGGGAAGAGAGAGGGTGAGAATGAAGATGAGCAGCAAGTGACTGCAAAGAAGCAGAAGAGAGATGAGGTTGCAGAGGAGCAAAGGATTATGGATGAAATTGTTTCAGATGATTCCTTCGCAGATTTTGAACCAGATAAGAATTCTGAAGCTAAAAAAGACTCCCTCAGTAAACAGGAGAAGAAAGGAAAACCTGATAGTGCTAACTGTTCCAGTTCTTTGGAGTCATTGGCTGATGGTTCTGAGGAGGATGCAGGGAATATGGATATTGATGAGGGTTATAATTCTGAAGAATGTAGTGAAGGAACACAAGAGAAGATGCAAGTTTTGCCTGTAAAAAGTTCAGAGAACAGTGAGAAAGGAATTGAGGAAAAAGACTCTAAAGCTCCTCAAGAAAATCCTAAAATGCTATCTACACCAAATGAACGAAATGCTGGATCGAAGACAATAGTAACTAGAAACTTGTCATACAGTGTGGAACGAGCTGATTTGGAAAATCTTTTCAAACCGTGTGGAGAAGTTGTTGATGTTCGTCTACATACAGATGCTGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCAGCACAAAAAGCTCTTCAGTTAAATTATACAGAATTGTTAAGATGCCGCATCAGAGTTGTTTTAGCTCCACAAAAGCATAAGCATACTGCCAATAGAAGCTTCCATGTTAATTCTAGCAACTTGAGTCACTCATTTCAAAGGAGTGAAAGAACTCAGCCTGTGAAAGCTTCAGAGATTTCAGGGGACTGGGAACAAGAAACTGAGTCAAAAATAATTGCTAACTGCAAAGACCTAAGTGCTACTTCAAAGACAATATATGCTTCAAACTTGGCATACAGTATGGAGAAGGATGATATGGAGTTTCTTTTCAAAAATTGTGGAGAAATTGTTGATATCCGCCTACATACAGATCATAACGGGCGGTTTAAAGGCCATGGACATGTTGAGTTTGCAACCACAGAAGCTGCACAAAAAGCTCTTGAATTGAATAATAAAGTATATCTGGGACGTCCTGTTGGAGTTTTTATTGCTAAAGGAAAGGGTGAATATACCTCCAATAGAAGCAACTGGAGCAAGTCATTCCACCAGAGTGAACAAACTAAGCCCATCAAAAGTACAGAGAGTTCAGAGTACTGTGAGGAAGAGGTTGAGGGAAAAGCCTCCAATAGTTATTGGGAAAGTTCTAAAAGGGTAGCTACTCTGAAAGAACAAAATGCTCCACCAAAGACAATATATGTCAGAAACTTGTCATACAGAGTGGAACAGGCTGATATGGAAAATCTTTTCAAAGAATGTGGAAAAATTGTTGATGTTCGTCTACATCGGAATCACAATGGTAGGTTAAATGGCTTTGGACAAGTTGAGTTTGCAACAGCAGAAGCTGCGAAAAAAGCTCTTGAGTTGCATAATACAGAATTGTTGAGACGTCCCATCGGAGTTGATTTGGCTGAAGAAAAAGGTGAATATACCTACAGTAGAAGCAATTTTAGCAACTGGAGCAACTCATTCCAGAAGTGTGAAAGAGCTCAGTCTCCAACTGTATTTGTGACGGGTTTTGATAGTTCCCTTCCGGCAGAAAAGCTGAAAGCTAGCCTAGAAGAACATTTTGGTTCTTGTGGAGAGATTCAAAGGATATCAATTCCGACATTTCCTGATTCTGGTGCTGTTAAGGGGTTTGCTCACTTGGGGTTCAAGGATGTTGTAAGTGTGAGGAAAGCTCTACATCTTGATCAAAATGAGCTAGGAGGTTTCCCCTTGAGAGTTGAAAAAGCAAAGCCTCGACGTGATAACTGGGGTATAGGCAGTGGCAGAGATGGACGTGATAACTGGGGTATAGGCAGTGGCAGAGATGGTGGTGATCATCAGTTTGGTGGAAGGGATGGAAGTGGCTATACCAGCAGAGTGGGTTGGGGGAGAAGTGGTGGTGGTGGGTGGCATTCTCTTCATTTTTCTGATGAAGACTCGGGGAGGAAGAACCACTCTTACTGA 2223 0.4143 MDNKSDQKVYYVRTAALLLQHNDEKQVSAKEQTREMGLMKRLRIRENMSGLRHVIAGATAVPPLRIGKREGENEDEQQVTAKKQKRDEVAEEQRIMDEIVSDDSFADFEPDKNSEAKKDSLSKQEKKGKPDSANCSSSLESLADGSEEDAGNMDIDEGYNSEECSEGTQEKMQVLPVKSSENSEKGIEEKDSKAPQENPKMLSTPNERNAGSKTIVTRNLSYSVERADLENLFKPCGEVVDVRLHTDAEGRFRGFGHVEFATAEAAQKALQLNYTELLRCRIRVVLAPQKHKHTANRSFHVNSSNLSHSFQRSERTQPVKASEISGDWEQETESKIIANCKDLSATSKTIYASNLAYSMEKDDMEFLFKNCGEIVDIRLHTDHNGRFKGHGHVEFATTEAAQKALELNNKVYLGRPVGVFIAKGKGEYTSNRSNWSKSFHQSEQTKPIKSTESSEYCEEEVEGKASNSYWESSKRVATLKEQNAPPKTIYVRNLSYRVEQADMENLFKECGKIVDVRLHRNHNGRLNGFGQVEFATAEAAKKALELHNTELLRRPIGVDLAEEKGEYTYSRSNFSNWSNSFQKCERAQSPTVFVTGFDSSLPAEKLKASLEEHFGSCGEIQRISIPTFPDSGAVKGFAHLGFKDVVSVRKALHLDQNELGGFPLRVEKAKPRRDNWGIGSGRDGRDNWGIGSGRDGGDHQFGGRDGSGYTSRVGWGRSGGGGWHSLHFSDEDSGRKNHSY* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0027 740 MobiDBLite consensus disorder prediction 306 320 - -
Gso20g0027 740 SMART rrm1_1 349 420 IPR000504 GO:0003723
Gso20g0027 740 SMART rrm1_1 488 559 IPR000504 GO:0003723
Gso20g0027 740 SMART rrm1_1 214 285 IPR000504 GO:0003723
Gso20g0027 740 SMART rrm1_1 591 667 IPR000504 GO:0003723
Gso20g0027 740 MobiDBLite consensus disorder prediction 306 325 - -
Gso20g0027 740 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 601 664 IPR000504 GO:0003723
Gso20g0027 740 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 416 IPR000504 GO:0003723
Gso20g0027 740 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 283 IPR000504 GO:0003723
Gso20g0027 740 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 489 556 IPR000504 GO:0003723
Gso20g0027 740 Gene3D - 572 713 IPR012677 -
Gso20g0027 740 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 289 IPR000504 GO:0003723
Gso20g0027 740 MobiDBLite consensus disorder prediction 432 454 - -
Gso20g0027 740 MobiDBLite consensus disorder prediction 67 130 - -
Gso20g0027 740 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 592 684 - -
Gso20g0027 740 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 102 429 - -
Gso20g0027 740 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 427 569 - -
Gso20g0027 740 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 685 740 - -
Gso20g0027 740 MobiDBLite consensus disorder prediction 165 180 - -
Gso20g0027 740 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 487 563 IPR000504 GO:0003723
Gso20g0027 740 SUPERFAMILY RNA-binding domain, RBD 583 698 IPR035979 GO:0003676
Gso20g0027 740 MobiDBLite consensus disorder prediction 674 705 - -
Gso20g0027 740 MobiDBLite consensus disorder prediction 197 211 - -
Gso20g0027 740 SUPERFAMILY RNA-binding domain, RBD 204 305 IPR035979 GO:0003676
Gso20g0027 740 MobiDBLite consensus disorder prediction 432 451 - -
Gso20g0027 740 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 424 IPR000504 GO:0003723
Gso20g0027 740 MobiDBLite consensus disorder prediction 182 196 - -
Gso20g0027 740 Gene3D - 155 286 IPR012677 -
Gso20g0027 740 MobiDBLite consensus disorder prediction 67 211 - -
Gso20g0027 740 SUPERFAMILY RNA-binding domain, RBD 480 579 IPR035979 GO:0003676
Gso20g0027 740 MobiDBLite consensus disorder prediction 147 163 - -
Gso20g0027 740 SUPERFAMILY RNA-binding domain, RBD 345 436 IPR035979 GO:0003676
Gso20g0027 740 Gene3D - 289 431 IPR012677 -
Gso20g0027 740 Gene3D - 432 571 IPR012677 -
Gso20g0027 740 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 590 671 IPR000504 GO:0003723
Gso20g0027 740 CDD RRM1_NUCLs 488 564 IPR034349 -
Gso20g0027 740 CDD RRM2_NUCLs 591 669 IPR034350 -
Gso20g0027 740 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 592 684 - -
Gso20g0027 740 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 685 740 - -
Gso20g0027 740 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 427 569 - -
Gso20g0027 740 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 102 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0027 Gso-Chr20 372111 423503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0027 205 576 Eukaryotic Initiation Factors Gene Family AT1G34140 24.599 4.55e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0027 - K11294 gsj:114403614 1466.44