Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0016 ATGGGACGTGGAAAGATTGAGATAAAGAGGATCGAGAACACCACCACAAGGCAAGTGACCTTCTCCAAAAGAAGAGGTGGCCTCTTGAAGAAGACAAAGGAGCTTTCTGTGCTTTGTGATGCTAAGATTGGGATTATCATCTTCTCCAGCACCGGGAAGATGAGGGAATGGTGCACCGAACCCTTTAGGATGGAGCAGATCATAGAGCAGTACCAGATATCAAAAGGAACTCCCATAGCGGAACGTGGACATGATCATCCCCGAGAAGAATTTTTCCATAATATGGCAATGCTGAGGCAGCAAACTATCCGTCTTGAATTGGAAATTCAACGCTATCTTGGAGAGGACATGAGGGGTTTACAATATGAAGATTTGACTAAACTTGAACAAGAATTGGAGAACTCTGTGGCAAGGATTCGAAACCGTCAAAATGAGCTCTTGCAACAGCAAATGGAGAATCTACGAAGGAAGGAAAGGATCTTGGAAGAGGAAAACAATCATTTTTCCAACTGGGAACACCACCAAGCAGTGTTGGAGTTTCAGAAGGCTGCTGCTACAGTGGAAGCAAGCAAACCAATGTATGTGATGGATCACTTCTCATTCTTTGAAGAGCAACCTGCTGGGAGCATCCTTCAACTAGCTTCTCCTATGCTTCCACACTTTCATCCATATCTTCAGCTGGCACAGCCCAATATCCAAGACTCAGTCAGGGGCCAAAGCTATAACAATGAGCAATAG 738 0.4472 MGRGKIEIKRIENTTTRQVTFSKRRGGLLKKTKELSVLCDAKIGIIIFSSTGKMREWCTEPFRMEQIIEQYQISKGTPIAERGHDHPREEFFHNMAMLRQQTIRLELEIQRYLGEDMRGLQYEDLTKLEQELENSVARIRNRQNELLQQQMENLRRKERILEEENNHFSNWEHHQAVLEFQKAAATVEASKPMYVMDHFSFFEEQPAGSILQLASPMLPHFHPYLQLAQPNIQDSVRGQSYNNEQ* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0016 245 Coils Coil 122 167 - -
Gso20g0016 245 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso20g0016 245 Pfam K-box region 86 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso20g0016 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso20g0016 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso20g0016 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso20g0016 245 PANTHER MADS BOX PROTEIN 1 219 - -
Gso20g0016 245 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Gso20g0016 245 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Gso20g0016 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso20g0016 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso20g0016 245 Gene3D - 14 91 IPR036879 GO:0003677|GO:0046983
Gso20g0016 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso20g0016 245 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 219 IPR031050 GO:0005634|GO:0048316
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0016 Gso-Chr20 218886 222862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0016 1 240 MADS-box Gene Family AT5G23260 44.706 1.12e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso20g0016 K-box 2.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0016 - - gmx:100783876 478.018