Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0010 ATGTCTGCAACATCCAAGGTCCTGCCTGCTCTCCACCCTATCAAATCATTGCCTCCCAAGTTCAATATTACTTCTGGTAATCCGACTGCTGGTCTAATGGAAAACCATGGAGATGCTAAGTTCAGAAGCAATGACGTGATCAGATCAGGTAGTCCAGAAAATGATGCTTTGATAGGGGAGGTTGCTGAGGAAGCTCAGAACTGTGCTGGTGACATGGGTGTTTACGGTGAGGACTTGGCGTACAGCAGAAAAGGTGTGTCGTTAGAAGACAGGCCATCAATTGCTGATGAAGACTTAGAATCTGTTCCTCTGCCCTTCCCATCAATTTCAATGTCCTCTAGGGAACGCAGGTGGAGTGATACAACACCTTATGCTTCAAAGAAGAAACTTCAGTCTTGGTTTCAACTTCCAAATGGGAATTGGGAGCTGGGGAAGATAATAACAACTTCTGGAAATGAATCCATCATTTCACTGTTTGACGGGAAGGTTTTGAAAGTGAAAGAAGAAAGTTTAGTACCAGCAAATCCTGATATCCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAATGAGCCATCAGTTTTATTCAACCTGCAATATAGATACAATCAAAACATGATTTATACAAAAGCAGGGCCTGTTTTGGTTGCTATAAATCCCTTTAAGAAAGTTCCTCTATATGGTAATGATTATATTGAAGCCTACAAGCGTAAAGCAATTGAAAGCCCTCATGTATATGCAATAACAGACACGGCCATCCGAGAAATGATACGAGATGAAGTCAATCAATCTATAATTATAAGTGGGGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAAATAGCAATGCAGTACTTGGCTGCCCTTGGCGGTGGAAGTGGAATAGAGTATGAGATTTTAAAGACTAATCCAATACTAGAAGCCTTTGGCAATGCAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATCTCCGGTGCTAATATTCAAACTTTTTTGCTTGAAAAGTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGATCATATCATATATTTTATCAGCTATGTGCTGGTGCACCTCCATCTCTCAGGGGGAAGCTAAACCTACAAAATGCAGAAGACTATAATTATCTGAGGCAGAGCAATTGTTATTCAATTACTGGTGTTAATGATGCAGAAGAATTTCGTACAGTCATGGAAGCTCTTGATGTTGTCCACATTAGTAAAGAAGACCAGGAGAATGTATTTGCAATGCTTGCTGCAGTATTATGGTTAGGAAACATATCATTTACTGTGATTGATAATGAAAATCATGTTCAAGCTGTAGAAGATGAGGGTCTGTTCCATGTAGCTAAATTAATTGGCTGTAGCATTGAAGATCTCAAGTTGACACTATCAACTCGCAAAATGAAAGTTGGTAATGATAATATTGTCCAAAAGTTGACGCTATCACAGGCCATTGATGCAAGAGATGCTTTGGCAAAGTCAATATATGCATGCCTGTTTGATTGGTTGGTTGAACAGATAAATAAATCACTTGCTGTTGGCAAAAGACGTACCGGCAGATCAATCAGTATTCTAGATATCTACGGCTTTGAATCTTTCAATAGGAACAGTTTTGAACAGTTCTGCATAAATTATGCAAATGAGAGATTACAGCAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATTCAAGATGGCATTGACTGGGCTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAGAAGAGGCCACTGGGTTTATTATCCTTGTTAGATGAAGAGTCCACTTTCCCAAATGGCACAGATCTAACACTTGCTAACAAGCTTAAACAGCATTTGAATTCTAATTCGTGCTTCAAAGGAGAAAGAGACCAAGCCTTTACTGTACACCATTATGCTGGGCAGGTAACCTATGATACAACTGGATTTCTGGAGAAAAACAGAGACCTATTGCACGTGGATTCCATCCAACTTCTATCCTCATGCACGTGTCCTCTTCCTCAAATATTTGCATCTCATATGCTCACTCAGTCTGATAAGCCGGTAGTTGGTCCCTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCAACAAAATTCAAGGGTCAATTGTTTCAACTGATGCAACGACTGGAGAGTACTACTCCACATTTTATTCGCTGCATTAAACCCAATAATCTCCAATCACCTGAATCATATGAGCAAGGGCTTGTATTGCAACAGCTGAGATGCTGTGGGGTCCTGGAAGTAGTTCGAATATCGAGATCAGGCTTTCCAACAAGAATGTCTCACCAAAAATTTGCCAGAAGATATGGTTTTCTCCTTGATAATGTTGCATCTCAGGATCCACTTAGTGTTTCGGTTGCAATTCTTCATCAGTTTAATATTTTGTCGGAGATGTATCAAGTTGGCTACACAAAATTATTTTTCCGGACAGGGCAGATTGGTGTGCTTGAAGATACTAGAAATCGTACCCTCCATGGCATTTTACGTGTCCAAAGTTGTTTCAGGGGTTTCCAAGCACGTCGTTCTCTCAAGGATCTTCGGGGAGGAATCACTACTTTGCAGTCATTTATTAGGGGAGACAAAACCAGAAAGGCATATTCAGCTTTACTTAAGAGGCATAGAGCTGCTGTTATTATACAGAAGCAAATCAAAGCAGTATTTGCAAGAAACAGAATGAGGACTATTAGTGATGCTGCAATAGTCATACAAGCAGTTATTCGTGGTTGGTTGGTCAGAAGATGCTCAGGAAATATTGGATTTTTGAAATCTGGAGACATGAAGATGAAAGAGTCTGATGAGGTTCTGGTTAAGTCATCTTTCCTGGCCGAATTACAGTGCCGAGTACTTAAGGCTGAAGCTGCCCTTAGAGAGAAAGAAGAGGAAAATGACATCCTTCATCAACGTCTCCAACAATATGAGAGCAGATGGTCTGAGTATGAACTAAAGATGAAATCCATGGAAGAAGTGTGGCAGAAACAAATGAGATCCCTACAATCTAGCCTCTCCATTGCAAAGAAGAGCCTTGCTATCGATGACTCTGAAAGAAATTCAGACACATCTGTTAATGCAAGTGATGAGCGGGATTACAGCTGGGATGTGGGAGGCAATCATCGGCGCCAAGAAAGCAATGGGGCAAGATCAACGAGTGCTGGTCTAAGTGTTATAAGTCGGCTGGCTGAAGAATTCGAGCACAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAGGTAAAATCTGGTCAGGTAGAAGCAAGTTTGAACCCAGATCAAGAGCTTAGAAGGTTAAAACAGATGTTTGAAGCTTGGAAAAAGGATTATGGGGCAAGACTGCGTGAAACAAAAGTTATTATAAATAAACTTGGAAGCGAAGATGGCGCACTTGAGAAAATGAAGAAAAAGTGGTGGGGAAGAAGGAACAGTACAAGGATAAATTGA 3531 0.405 MSATSKVLPALHPIKSLPPKFNITSGNPTAGLMENHGDAKFRSNDVIRSGSPENDALIGEVAEEAQNCAGDMGVYGEDLAYSRKGVSLEDRPSIADEDLESVPLPFPSISMSSRERRWSDTTPYASKKKLQSWFQLPNGNWELGKIITTSGNESIISLFDGKVLKVKEESLVPANPDILDGVDDLMQLSYLNEPSVLFNLQYRYNQNMIYTKAGPVLVAINPFKKVPLYGNDYIEAYKRKAIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPPSLRGKLNLQNAEDYNYLRQSNCYSITGVNDAEEFRTVMEALDVVHISKEDQENVFAMLAAVLWLGNISFTVIDNENHVQAVEDEGLFHVAKLIGCSIEDLKLTLSTRKMKVGNDNIVQKLTLSQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKRPLGLLSLLDEESTFPNGTDLTLANKLKQHLNSNSCFKGERDQAFTVHHYAGQVTYDTTGFLEKNRDLLHVDSIQLLSSCTCPLPQIFASHMLTQSDKPVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPESYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLDNVASQDPLSVSVAILHQFNILSEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGFQARRSLKDLRGGITTLQSFIRGDKTRKAYSALLKRHRAAVIIQKQIKAVFARNRMRTISDAAIVIQAVIRGWLVRRCSGNIGFLKSGDMKMKESDEVLVKSSFLAELQCRVLKAEAALREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDTSVNASDERDYSWDVGGNHRRQESNGARSTSAGLSVISRLAEEFEHRSQVFGDDAKFLVEVKSGQVEASLNPDQELRRLKQMFEAWKKDYGARLRETKVIINKLGSEDGALEKMKKKWWGRRNSTRIN* 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0010 1176 SMART MYSc_2a 174 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0010 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 899 IPR027417 -
Gso20g0010 1176 MobiDBLite consensus disorder prediction 1066 1080 - -
Gso20g0010 1176 Coils Coil 971 1019 - -
Gso20g0010 1176 Gene3D - 362 418 - -
Gso20g0010 1176 Gene3D - 550 742 - -
Gso20g0010 1176 MobiDBLite consensus disorder prediction 1042 1080 - -
Gso20g0010 1176 ProSiteProfiles IQ motif profile. 876 905 IPR000048 GO:0005515
Gso20g0010 1176 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 9 1176 - -
Gso20g0010 1176 Pfam Myosin head (motor domain) 182 839 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0010 1176 ProSiteProfiles Myosin motor domain profile. 180 851 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0010 1176 CDD MYSc_Myo8 194 839 IPR036022 -
Gso20g0010 1176 ProSiteProfiles IQ motif profile. 855 882 IPR000048 GO:0005515
Gso20g0010 1176 Gene3D - 904 946 - -
Gso20g0010 1176 Gene3D - 855 903 - -
Gso20g0010 1176 ProSiteProfiles IQ motif profile. 925 954 IPR000048 GO:0005515
Gso20g0010 1176 SMART iq_5 924 946 IPR000048 GO:0005515
Gso20g0010 1176 SMART iq_5 852 874 IPR000048 GO:0005515
Gso20g0010 1176 SMART iq_5 901 923 IPR000048 GO:0005515
Gso20g0010 1176 SMART iq_5 875 897 IPR000048 GO:0005515
Gso20g0010 1176 Pfam IQ calmodulin-binding motif 927 943 IPR000048 GO:0005515
Gso20g0010 1176 Pfam IQ calmodulin-binding motif 857 874 IPR000048 GO:0005515
Gso20g0010 1176 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 127 176 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gso20g0010 1176 Gene3D - 786 852 - -
Gso20g0010 1176 Gene3D Myosin VI head, motor domain, U50 subdomain 419 527 - -
Gso20g0010 1176 PANTHER MYOSIN 9 1176 - -
Gso20g0010 1176 PRINTS Myosin heavy chain signature 210 229 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0010 1176 PRINTS Myosin heavy chain signature 264 289 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0010 1176 PRINTS Myosin heavy chain signature 306 333 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0010 1176 PRINTS Myosin heavy chain signature 538 566 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0010 1176 PRINTS Myosin heavy chain signature 591 619 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0010 1176 Gene3D Kinesin motor domain 179 785 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0010 Gso-Chr20 132811 150176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0010 6 1174 Myosins gene family AT1G50360 74.915 0.0 1787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0010 - K10357 gmx:100781736 2319.27