Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0005 ATGGCGGGAGTGAGGGAACAGGACCAGTACATGCCGATAGCGAACGTGATAAGGATCATGCGTCGGATTCTGCCAGCGCACGCGAAGATCTCAGACGACGCGAAGGAGACGATCCAGGAGTGCGTGTCTGAGTACATCAGTTTCATCACGGCGGAGGCGAACGAGCGGTGCCAGCGGGAGCAGCGGAAGACGGTGACCGCAGAGGATGTGTTGTGGGCGATGGAGAAGCTTGGCTTTGACAACTACGCTCACCCTCTCTCTCTTTACCTTCACCGCTACCGCGAGAGTGAAGGAGAACCTGCTTCTGTCAGACGCGCTTCTTCTGCAATGGGGATCAATAATAATATGGTGCACCCACCTTATATTAATTCTCATGGCTTTGGAATGTTTGATTTTGACCCATCATCGCAAGGGTTTTACAGGGACGATCATAACGCTGCTTCTGGATCTGGTGGTTTTGTTGCGCCTTTTGATCCTTATGCTAACATCAAACGTGATGCCCTGTGA 507 0.5207 MAGVREQDQYMPIANVIRIMRRILPAHAKISDDAKETIQECVSEYISFITAEANERCQREQRKTVTAEDVLWAMEKLGFDNYAHPLSLYLHRYRESEGEPASVRRASSAMGINNNMVHPPYINSHGFGMFDFDPSSQGFYRDDHNAASGSGGFVAPFDPYANIKRDAL* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0005 168 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Gso20g0005 168 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Gso20g0005 168 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Gso20g0005 168 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 113 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso20g0005 168 SUPERFAMILY Histone-fold 7 115 IPR009072 GO:0046982
Gso20g0005 168 Gene3D Histone, subunit A 2 116 IPR009072 GO:0046982
Gso20g0005 168 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Gso20g0005 168 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0005 Gso-Chr20 58995 60357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0005 4 120 CCAAT-HAP3 Transcription Factor Family AT5G47670 76.923 1.19e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso20g0005 CBFD_NFYB_HMF 4.1e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0005 K08065 - gmx:547959 346.28