Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0003 ATGTTTCCTCAGGAGAATCATAGTAACGGCTATCAGCATCAGCAGGGTTACAGTCACAGAGAGCGAGTCCGTCGGGGCACTTGCAGGTCACGTGCCTCCACTTCCTCACACTCTCACTCCGTTAGGGTTTACGACCAACCTCGTCCTCCTTGCACTGATTTCGACGTCGCCTATTTCCATTCCTACGCTCACCTTGGCATCCACCAAGAGATGATCAAGGATCGTGTGCGTACTGATACTTATAGGGATGCAATCATGCAGCATCAGAGTTTCATTGCAGGCAAAGTTGTCGTTGATGTTGGATGCGGTACAGGAATCCTTTCTATATTTTGTGCTCAGGCTGGTGCAAAACGGGTGTATGCAATTGATGCCAGTGACATTGCCCTGCAGGCAAATGAAGTTGTGAAAGCAAATAACTTGTCTGATGTTGTTGTTGTATTGCATGGGCGAGTTGAGGATGTTGAAATTAATGAAGAAGTGGATGTTATAATTTCCGAATGGATGGGCTATATGCTTCTGTATGAGAGCATGCTTGGAAGTGTTATTAATGCTAGAGATCGTTGGCTCAAACCTGGTGGTCTTATTCTTCCTTCAAGTTCAACGTTGTACATGGCTCCTGTCACTCATACGGACAGATACAGTGACAGTGTTGACTTCTGGCGCAATGTTTATGGAATTGATATGTCTGCCATGGTATCACTGGCTAAACAATGCGCATTTGAAGAACCTTCCGTGGAGACTATAACTGGTGAAAATGTCTTGACATGGCCACATGTGGTAAAATATATTGATAGTTATTCTGTTACCATCCAAGAGTTAGAATCTGTAACAGCCAAGTTTAAGTTCAATTCCATGATGCGAGCACCACTGCATGGTTTTGCATTTTGGTTTGACGTTGAATTTAATGGGCATGCAATACCATCAACCAATTATCATTCGACAACTTCATTTGTTGACAATCATCAGATGAATGGTAGTCAGAGAAAAAGGCGAACAAACCCAAATGAAGCACTGGTCTTGTCCACTGCACCTGAGGACCCTCCTACACATTGGCAGCAGACATTGATATACTTTTACGATCCTATAGAGCTGGAACAAGATCAACTAATTGAAGGTTTGGTAACATTGTCACAGAGCAAAGAAAATGCTCGATTTATGAATATTCACCTTGAATATACGTGGTCGATCTTATGTGAAAGAGTCTGTTATGAGATGATCTTTTCTTGTATTTTGGCATTGTCTTTTGCATTAGCACTTGCACAACATTCTCTGATTGCAGCTTATATCTTTTCTGACTTCGTTTCTCCTGGAGAACTGAGGTAG 1323 0.4248 MFPQENHSNGYQHQQGYSHRERVRRGTCRSRASTSSHSHSVRVYDQPRPPCTDFDVAYFHSYAHLGIHQEMIKDRVRTDTYRDAIMQHQSFIAGKVVVDVGCGTGILSIFCAQAGAKRVYAIDASDIALQANEVVKANNLSDVVVVLHGRVEDVEINEEVDVIISEWMGYMLLYESMLGSVINARDRWLKPGGLILPSSSTLYMAPVTHTDRYSDSVDFWRNVYGIDMSAMVSLAKQCAFEEPSVETITGENVLTWPHVVKYIDSYSVTIQELESVTAKFKFNSMMRAPLHGFAFWFDVEFNGHAIPSTNYHSTTSFVDNHQMNGSQRKRRTNPNEALVLSTAPEDPPTHWQQTLIYFYDPIELEQDQLIEGLVTLSQSKENARFMNIHLEYTWSILCERVCYEMIFSCILALSFALALAQHSLIAAYIFSDFVSPGELR* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0003 440 Pfam Ribosomal protein L11 methyltransferase (PrmA) 93 168 - -
Gso20g0003 440 MobiDBLite consensus disorder prediction 1 16 - -
Gso20g0003 440 CDD AdoMet_MTases 97 196 - -
Gso20g0003 440 PANTHER BNAC03G41340D PROTEIN 47 393 - -
Gso20g0003 440 MobiDBLite consensus disorder prediction 1 44 - -
Gso20g0003 440 Gene3D - 199 398 - -
Gso20g0003 440 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 55 389 IPR025799 GO:0016274|GO:0018216
Gso20g0003 440 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 61 395 IPR029063 -
Gso20g0003 440 Gene3D Vaccinia Virus protein VP39 52 197 IPR029063 -
Gso20g0003 440 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 47 393 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0003 Gso-Chr20 39391 48995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0003 58 372 C2H2 Transcription Factor Family AT3G12270 38.485 2.06e-65 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0003 K11437 - gmx:100809171 785.023