Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g2086 ATGGCAGAGAAAGAGAGATGGCCTGTGTGCTCATTCATGGGTGACGGTGAAGCAGTAGCAGTACCGCACTCAAAACTGAAGAAGAAAGGTAGGCCACCAATACCAAAGAAGGAAAATGTGTTTAAAGAATTGAACGGAGTTGATGATGATCCTCGTAATCCTCAAAAAAGACGAAAGGGAGAGGGAACAGGCATGGGCATTGTCATTGATGCTCCTCCATGTAATACTCAAGCTTACCAACGTGCAAAAGAGGTTCAAGCTAACCTATCTCCTCAATTCCCAACCTTTCTTAAGTCCATGCTTCCATCTCACGTAGCCGGAGGATTTTGGCTTGGTCTTCCCAAAAAATTCTGTAACTTGTATATGCCCAAGCTTGATACTACCATCGCTTTGGAAGATGAAACTGGCCAACTTTATGAAACCAAATATCTTGCTCAAAAGGCCGGTTTAAGTGCAGGATGGAGGGGCTTTTCCATAGCTCATAACTTACTTGAGATGGATGTTCTAATATTCCACCTGGTCCAACCTTCCAAGTTTAGGGTGTACATTATAAGATCTCAGGAATCTGATGAACTGGATGGTGCTCTTGTCCTTCTTAAGTCAGATGGGTGCAGAAAACAAAGTGATGACCAGGTTGAAAATACTAGTGAAGATTTTGACTCTGGAATTAGATTTTCAGAATCAGTTGTCAGTTTCAAGCAAGTGACTGGTGTGGAGAATTTCAGGATTGTGGTGAATGGTTTGGTTATTGATTCGGAGCTCTCCAAATACATTCGGAACAAGTATTATGAGCTGTGTTGCAGCCAGAGGTCGTTTCTTCATGACCATCTTCTTGAGGGTCTTAACACTAAACTGGCGGCTGGAATAATTTCTGAGACCATTAATATTGCCGATGCCATTAAAGCCAGCAATCTTACAACCTCTCCAGATAGTCTTGTCATATGGGACAAAACTTTGAAAGCCTTTGAGACAATGGGTATGAATGTCAGCTTCTTGCTTATTCGGCTAGACCAGCTCATGAAACTAGCTTTGAAATTGAAGAGGTACAAGGAGGTAACACTCGAAAGAGACCACGCTGCAGAGGAGTTGAAAGCTCTAGAAGCAAAACTATTGGAAGTAAAACAAACTATAAATAGACTTGATCAAGAGAATGATATACAACATATGCACCCTGAGAGGCTGGAGACTATGTTCCAAGAACTGGCTGATGCTCCTTGGTGA 1221 0.4218 MAEKERWPVCSFMGDGEAVAVPHSKLKKKGRPPIPKKENVFKELNGVDDDPRNPQKRRKGEGTGMGIVIDAPPCNTQAYQRAKEVQANLSPQFPTFLKSMLPSHVAGGFWLGLPKKFCNLYMPKLDTTIALEDETGQLYETKYLAQKAGLSAGWRGFSIAHNLLEMDVLIFHLVQPSKFRVYIIRSQESDELDGALVLLKSDGCRKQSDDQVENTSEDFDSGIRFSESVVSFKQVTGVENFRIVVNGLVIDSELSKYIRNKYYELCCSQRSFLHDHLLEGLNTKLAAGIISETINIADAIKASNLTTSPDSLVIWDKTLKAFETMGMNVSFLLIRLDQLMKLALKLKRYKEVTLERDHAAEELKALEAKLLEVKQTINRLDQENDIQHMHPERLETMFQELADAPW* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g2086 406 Coils Coil 349 383 - -
Gso1g2086 406 Gene3D - 75 189 IPR015300 -
Gso1g2086 406 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100 44 338 - -
Gso1g2086 406 SUPERFAMILY DNA-binding pseudobarrel domain 89 186 IPR015300 -
Gso1g2086 406 MobiDBLite consensus disorder prediction 33 59 - -
Gso1g2086 406 CDD B3_DNA 94 185 IPR003340 GO:0003677
Gso1g2086 406 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 44 338 IPR044837 -
Gso1g2086 406 MobiDBLite consensus disorder prediction 23 67 - -
Gso1g2086 406 ProSiteProfiles B3 DNA-binding domain profile. 96 187 IPR003340 GO:0003677
Gso1g2086 406 SMART B3_2 96 187 IPR003340 GO:0003677
Gso1g2086 406 Pfam B3 DNA binding domain 96 186 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g2086 Gso-Chr1 57204356 57206322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g2086 78 235 B3 DNA Binding Superfamily AT3G19184 42.236 6.01e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso1g2086 B3 1.2e-13 CL0405