LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso1g2086	ATGGCAGAGAAAGAGAGATGGCCTGTGTGCTCATTCATGGGTGACGGTGAAGCAGTAGCAGTACCGCACTCAAAACTGAAGAAGAAAGGTAGGCCACCAATACCAAAGAAGGAAAATGTGTTTAAAGAATTGAACGGAGTTGATGATGATCCTCGTAATCCTCAAAAAAGACGAAAGGGAGAGGGAACAGGCATGGGCATTGTCATTGATGCTCCTCCATGTAATACTCAAGCTTACCAACGTGCAAAAGAGGTTCAAGCTAACCTATCTCCTCAATTCCCAACCTTTCTTAAGTCCATGCTTCCATCTCACGTAGCCGGAGGATTTTGGCTTGGTCTTCCCAAAAAATTCTGTAACTTGTATATGCCCAAGCTTGATACTACCATCGCTTTGGAAGATGAAACTGGCCAACTTTATGAAACCAAATATCTTGCTCAAAAGGCCGGTTTAAGTGCAGGATGGAGGGGCTTTTCCATAGCTCATAACTTACTTGAGATGGATGTTCTAATATTCCACCTGGTCCAACCTTCCAAGTTTAGGGTGTACATTATAAGATCTCAGGAATCTGATGAACTGGATGGTGCTCTTGTCCTTCTTAAGTCAGATGGGTGCAGAAAACAAAGTGATGACCAGGTTGAAAATACTAGTGAAGATTTTGACTCTGGAATTAGATTTTCAGAATCAGTTGTCAGTTTCAAGCAAGTGACTGGTGTGGAGAATTTCAGGATTGTGGTGAATGGTTTGGTTATTGATTCGGAGCTCTCCAAATACATTCGGAACAAGTATTATGAGCTGTGTTGCAGCCAGAGGTCGTTTCTTCATGACCATCTTCTTGAGGGTCTTAACACTAAACTGGCGGCTGGAATAATTTCTGAGACCATTAATATTGCCGATGCCATTAAAGCCAGCAATCTTACAACCTCTCCAGATAGTCTTGTCATATGGGACAAAACTTTGAAAGCCTTTGAGACAATGGGTATGAATGTCAGCTTCTTGCTTATTCGGCTAGACCAGCTCATGAAACTAGCTTTGAAATTGAAGAGGTACAAGGAGGTAACACTCGAAAGAGACCACGCTGCAGAGGAGTTGAAAGCTCTAGAAGCAAAACTATTGGAAGTAAAACAAACTATAAATAGACTTGATCAAGAGAATGATATACAACATATGCACCCTGAGAGGCTGGAGACTATGTTCCAAGAACTGGCTGATGCTCCTTGGTGA	1221	0.4218	MAEKERWPVCSFMGDGEAVAVPHSKLKKKGRPPIPKKENVFKELNGVDDDPRNPQKRRKGEGTGMGIVIDAPPCNTQAYQRAKEVQANLSPQFPTFLKSMLPSHVAGGFWLGLPKKFCNLYMPKLDTTIALEDETGQLYETKYLAQKAGLSAGWRGFSIAHNLLEMDVLIFHLVQPSKFRVYIIRSQESDELDGALVLLKSDGCRKQSDDQVENTSEDFDSGIRFSESVVSFKQVTGVENFRIVVNGLVIDSELSKYIRNKYYELCCSQRSFLHDHLLEGLNTKLAAGIISETINIADAIKASNLTTSPDSLVIWDKTLKAFETMGMNVSFLLIRLDQLMKLALKLKRYKEVTLERDHAAEELKALEAKLLEVKQTINRLDQENDIQHMHPERLETMFQELADAPW*	407

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso1g2086	406	Coils	Coil	349	383	-	-
Gso1g2086	406	Gene3D	-	75	189	IPR015300	-
Gso1g2086	406	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS01G0234100	44	338	-	-
Gso1g2086	406	SUPERFAMILY	DNA-binding pseudobarrel domain	89	186	IPR015300	-
Gso1g2086	406	MobiDBLite	consensus disorder prediction	33	59	-	-
Gso1g2086	406	CDD	B3_DNA	94	185	IPR003340	GO:0003677
Gso1g2086	406	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	44	338	IPR044837	-
Gso1g2086	406	MobiDBLite	consensus disorder prediction	23	67	-	-
Gso1g2086	406	ProSiteProfiles	B3 DNA-binding domain profile.	96	187	IPR003340	GO:0003677
Gso1g2086	406	SMART	B3_2	96	187	IPR003340	GO:0003677

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso1g2086	Gso-Chr1	57204356	57206322	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso1g2086	78	235	B3 DNA Binding Superfamily	AT3G19184	42.236	6.01e-37	134

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Gso1g2086		B3	1.2e-13	CL0405

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso1g2086	-		-	gmx:100782165	655.981

Showing 1 to 1 of 1 entries

Previous1Next