Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g2085 ATGGAGGAAGAGGAAGATGAAGTGGGTTGGTGTTCTTCTGATTCGGGCGACGGCGACGGCGACGACGATATCGAAGAACGGAAATCTCAGAATGTGGATGCCTTGCTCAGGGGCAACCTCGTGGTGAAGAGACAATCGTTGCTACCGCGACTTCTATCAGTATCGCAAGGAGCGGCTGTTTGTAGAAAGCCCTTCAAACCTCCATGCTCTAAATCTCATGCTTCCGCTTCCGCTTACAATCAAGACCTTACTCGTAAGCTTTCCGCTCGCAAAAGGTTTGTTCCCTGGGGTTCTTCCTCTCCTATTCCTATTCCTATTCCTAGATCTGCCTTAGACGACTCCAAATTCAATGTTGCTGTTGCTGTTGCTGATGTTGCCGAGGAGCTCAAGCCCTCTTTGCCTCCCGGGATTGATCCTCTCGTATTGTGGCACCCTCAAGACTCCGAGGATGCTAATGCTAATTTTACCACCATAACAGTTGATCCGTTGCTTGTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTGATTGTGTCTCAGGCCTGTCTACCACACCAAATATACACGGATGCATTTTGGCAGATGATATGGGTTTGGGGAAGACATTGCAGTCCATCACATTACTATATACTCTACTTTCTCAAGGGTTTGATGGCAAACCAATGGTTCGAAAGGCCATCATTGTGACTCCTACCAGCCTTGTCAGCAATTGGGAAGCTGAAATCAAAAAGTGGGTTGGAGAAAGAGTTCCTCTTGTTGCTTTATGTGAAAGCACAAGGGAAGATGTCATCTCCGGGATTGACAATTTTACAAGTCCCAAAAGCAATTTACAGGTGCTCATTGTTTCATATGAGACATTTCGAATGCATTCGTCAAAGTTTAGCTCTACTGACTCATGTGACCTTCTCATATGTGATGAGGCTCACAGACTGAAAAATGATCAGACGATAACAAACCGGGCATTGGCAGCTCTCCCCTGCAAACGTAGAATTTTGTTGTCAGGAACTCCCTTGCAAAATGACTTAGAAGAATTCTTTGCAATGGTTAACTTTACTAATCCTGGAATATTGGGTGATATTGCACATTTTCGACGTTACTATGAGGCACCAATTATTTGTGGAAGAGAACCTGCTGCCACTGCGGAAGAGAAGAAGCTAGGTGCTGAACAGTCTGCTGAATTAAGTGTCAATGTTAACCGGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCACTTACCACCTAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTGCAGTCAGAACTATATAAACATTTTATACAATCCAAAAATGTTAAGCGGGCAATTACTGAAGAACTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTCAAAAAGTTGTGCAATCATCCAAAGCTTATCTATGATACCATACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGTATCCGATTCTTCCCTCCTGAAATGTTATCTGGAAGGTCTGGCTCATGGACGGGAGGGCATGGAGCATGGGTTGAGCTATCAGGGAAAATGCATGTCTTAGCAAGATTACTTGCTCATTTACGTCAGAGAACAAATGACCGCATTGTCCTTGTCTCAAACTACACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCTCACTTGAGGCTTGACGGCTCTACATCAATCAGTAAAAGGCAGAAGTTGGTCAACTGCTTTAATGATCCATCCAAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTCGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTATGGAGGGATGGACAGAAGAAAAGAGTTTATATTTATAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGAGCAAACCGATAGCCTTGTGGCACAGGGTAACTTGCTTTCAACAGAGAATCTTCGTGATTTGTTTACTTTTCATGAGAACATCAAGTCAGAGATTCATGAAAACATGCAATGCAGTCGGTGTCAAACATTTGATGGCCCTCGAAGCACTGAAGCCCAGTCAACAATAACAGATAGTGAATCTGATGAAGAAACCTCTGATATTGGTGGATTTGCAGAAATTGCTGGCTGCTTACAGAATTTAAAAAGATCAGAAAAGCAGGTAGGGAGCCCATTGGAAGAGGATTTAGGAAGTTGGGGCCATCATTTTTTCCCAACTTCTGTACCAGATGCTATACTTCAGGCTTCAGCCGGTGATGAGGTGACTTTTGTCTTCACAAACCAAGTTAACGGACGACTGGTACCCGTTGAATCTATTATGAGTCCCAAGCTACAGCAAAAGGATCCAAAAAAGGAATTACTCAAGTCAAAGCAGAACGGTAAACAAAAGCCCACTCCTTTTTCTTTACATAACAGACTACCATTGCAGTCTGCTTCTGTCGGGATTACTAAAAACATCTCCATGAATGTGGCATTTAAGCCCCAGTACTCTCTTGTAAGTAAAGTATTGCCACAGAAAAGATCATGTCCTGCTAATATCAATGATGATAATTGA 2673 0.431 MEEEEDEVGWCSSDSGDGDGDDDIEERKSQNVDALLRGNLVVKRQSLLPRLLSVSQGAAVCRKPFKPPCSKSHASASAYNQDLTRKLSARKRFVPWGSSSPIPIPIPRSALDDSKFNVAVAVADVAEELKPSLPPGIDPLVLWHPQDSEDANANFTTITVDPLLVRYLRPHQREGVQFMFDCVSGLSTTPNIHGCILADDMGLGKTLQSITLLYTLLSQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWVGERVPLVALCESTREDVISGIDNFTSPKSNLQVLIVSYETFRMHSSKFSSTDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYYEAPIICGREPAATAEEKKLGAEQSAELSVNVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSELYKHFIQSKNVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAHLRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGSTSISKRQKLVNCFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDSLVAQGNLLSTENLRDLFTFHENIKSEIHENMQCSRCQTFDGPRSTEAQSTITDSESDEETSDIGGFAEIAGCLQNLKRSEKQVGSPLEEDLGSWGHHFFPTSVPDAILQASAGDEVTFVFTNQVNGRLVPVESIMSPKLQQKDPKKELLKSKQNGKQKPTPFSLHNRLPLQSASVGITKNISMNVAFKPQYSLVSKVLPQKRSCPANINDDN* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g2085 890 Gene3D - 431 700 - -
Gso1g2085 890 SMART helicmild6 553 637 IPR001650 -
Gso1g2085 890 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 409 IPR027417 -
Gso1g2085 890 Gene3D - 141 408 IPR038718 -
Gso1g2085 890 SMART ultradead3 164 367 IPR014001 -
Gso1g2085 890 MobiDBLite consensus disorder prediction 817 831 - -
Gso1g2085 890 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 526 687 IPR001650 -
Gso1g2085 890 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 51 816 - -
Gso1g2085 890 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 798 IPR027417 -
Gso1g2085 890 Pfam Helicase conserved C-terminal domain 528 636 IPR001650 -
Gso1g2085 890 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 359 IPR014001 -
Gso1g2085 890 CDD DEXHc_RAD54 168 409 - -
Gso1g2085 890 MobiDBLite consensus disorder prediction 717 738 - -
Gso1g2085 890 Pfam SNF2-related domain 171 477 IPR000330 GO:0005524|GO:0140658
Gso1g2085 890 Gene3D - 409 716 IPR027417 -
Gso1g2085 890 PANTHER SNF2/RAD54 FAMILY MEMBER 51 816 - -
Gso1g2085 890 MobiDBLite consensus disorder prediction 813 843 - -
Gso1g2085 890 MobiDBLite consensus disorder prediction 1 26 - -
Gso1g2085 890 MobiDBLite consensus disorder prediction 1 21 - -
Gso1g2085 890 CDD SF2_C_SNF 520 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g2085 Gso-Chr1 57181854 57201939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g2085 517 695 RAD5 or RAD16-like Gene Family AT5G43530 36.111 1.78e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso1g2085 SNF2_N 4e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g2085 K10875 - gmx:100781631 1759.58