Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g2057 ATGGTTATGGCTTCGTGGAAGAAGCTGGTGTTGTTGTTGTTGATCTTTCTCTGCACTTGTAAAGCACAGGAGGAACAGAGCTCCACCCCGGTGTACCTGTACCATAACTGTTCCGGCGGCAACACCACCGCCAACAGTGCCTACCAACTCAACCTGAGGACCCTCCTCACTTCCCTGTCTTCCAACGCCACCACCACCGAATTCTCCAACAACACCGTGGGACTGGGAACATCCCCGTCCGACAGGGTGTACGGCCTGTTCATGTGCAGGGGTGACGTGCCCTCTGCTCTGTGCCAACAGTGCGTGGTGAACGCAACGGGGCGTCTCCGCTCCCAGTGCTCCCTGGCCAAACAGGCCGTCATTTGGTACGACGAGTGCACCGTGCGGTACTCGAACCGCTCCTTCTTCTCCACAGTGGACACGCGGCCACGTGTCGGCCTCCTGAACACCGCCAACATCTCCAACCAGGATTCCTTCATGCGCCTGCTTTTCCAAACCATAAACAGAACCGCTGACGAGGCTGCAAACTTTTCCGTGGGTTTGAAGAAATACGCAGTGAATCAAGCCAACATTTCTGGGTTTCAGTCTCTATACTGTTTGGCTCAGTGCACGCCGGATCTGTCCCAGGAAAACTGTAGAAGTTGTCTGAGTGGTGTGATTGGAGACCTTCCTTGGTGCTGTCAGGGAAAGCAGGGAGGAAGGGTTCTCTATCCTAGCTGTAATGTCAGGTACGAGCTCTACCCTTTCTACCGCGTCACTGCTTCCCCTCCTTCATCTTCACCTTCACCGCCAACACTTCTTCCTCCTCCAACTTCACCAATTTCCCCAGGAAGCAGTGGGATCTCAGCTGGAACGATTGTTGCAATTGTGGTTCCAATTACGGTCGCTGTGCTTATATTTATAGTCGGAATTTGTTTCTTGAGTAGAAGAGCAAGGAAGAAGCAGCAGGGTTCTGTAAAGGAAGGAAAAACTGCGTATGACATCCCCACTGTGGACTCCTTGCAATTCGATTTCAGCACAATTGAAGCGGCCACAAACAAGTTCTCTGCCGATAACAAGTTGGGGGAAGGTGGATTTGGTGAGGTTTACAAGGGCACTCTTTCGAGTGGACAAGTAGTAGCTGTCAAGAGACTCTCCAAAAGCTCTGGACAAGGTGGAGAAGAATTTAAGAATGAAGTGGTGGTGGTTGCCAAGCTTCAACATAGAAATTTAGTCAGGCTTCTTGGGTTTTGCTTGCAAGGAGAAGAGAAGATACTTGTTTATGAATATGTGCCCAACAAAAGTCTCGACTATATTCTCTTTGATCCTGAAAAGCAAAGGGAGTTGGATTGGGGGAGACGTTACAAGATTATTGGAGGGATTGCTCGAGGCATTCAATACCTTCATGAAGATTCTAGGCTTAGAATTATACATCGTGATCTTAAAGCTAGTAACATATTGTTGGATGGAGATATGAATCCGAAAATCTCAGATTTTGGCATGGCAAGAATATTTGGAGTCGATCAAACTCAAGGAAACACCAGCAGAATAGTAGGGACTTATGGTTACATGGCTCCAGAGTATGCCATGCATGGAGAGTTCTCTGTTAAGTCTGACGTGTACAGTTTTGGAGTCCTGCTCATGGAGATTTTAAGTGGCAAGAAGAATAGCTCTTTCTATCAAACGGATGGTGCTGAGGATCTATTGAGCTATGCTTGGCAACTTTGGAAGGATGGAACACCTTTGGAACTGATGGACCCCATATTAAGAGAATCCTATAATCAGAATGAAGTCATCAGAAGCATCCATATTGGTTTGTTGTGTGTCCAAGAAGATCCAGCTGACAGACCCACAATGGCAACAATAGTTCTTATGCTAGACAGTAACACTGTTACTCTACCAACTCCTACGCAGCCTGCATTTTTCGTCCACAGTGGAACTGATCCAAACATGCCAAAGGAGCTGCCATTCGATCAATCAATACCAATGTCTGTGAATGACATGTCGATTAGCGAAATGGATCCTCGATAA 2010 0.4766 MVMASWKKLVLLLLIFLCTCKAQEEQSSTPVYLYHNCSGGNTTANSAYQLNLRTLLTSLSSNATTTEFSNNTVGLGTSPSDRVYGLFMCRGDVPSALCQQCVVNATGRLRSQCSLAKQAVIWYDECTVRYSNRSFFSTVDTRPRVGLLNTANISNQDSFMRLLFQTINRTADEAANFSVGLKKYAVNQANISGFQSLYCLAQCTPDLSQENCRSCLSGVIGDLPWCCQGKQGGRVLYPSCNVRYELYPFYRVTASPPSSSPSPPTLLPPPTSPISPGSSGISAGTIVAIVVPITVAVLIFIVGICFLSRRARKKQQGSVKEGKTAYDIPTVDSLQFDFSTIEAATNKFSADNKLGEGGFGEVYKGTLSSGQVVAVKRLSKSSGQGGEEFKNEVVVVAKLQHRNLVRLLGFCLQGEEKILVYEYVPNKSLDYILFDPEKQRELDWGRRYKIIGGIARGIQYLHEDSRLRIIHRDLKASNILLDGDMNPKISDFGMARIFGVDQTQGNTSRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLLMEILSGKKNSSFYQTDGAEDLLSYAWQLWKDGTPLELMDPILRESYNQNEVIRSIHIGLLCVQEDPADRPTMATIVLMLDSNTVTLPTPTQPAFFVHSGTDPNMPKELPFDQSIPMSVNDMSISEMDPR* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g2057 669 ProSiteProfiles Gnk2-homologous domain profile. 141 249 IPR002902 -
Gso1g2057 669 Pfam Protein tyrosine and serine/threonine kinase 350 617 IPR001245 GO:0004672|GO:0006468
Gso1g2057 669 Pfam Salt stress response/antifungal 154 247 IPR002902 -
Gso1g2057 669 Pfam Salt stress response/antifungal 37 132 IPR002902 -
Gso1g2057 669 Gene3D - 29 135 IPR038408 -
Gso1g2057 669 Gene3D - 144 249 IPR038408 -
Gso1g2057 669 ProSiteProfiles Protein kinase domain profile. 348 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g2057 669 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Gso1g2057 669 SMART serkin_6 348 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g2057 669 SUPERFAMILY Protein kinase-like (PK-like) 333 643 IPR011009 -
Gso1g2057 669 ProSiteProfiles Gnk2-homologous domain profile. 30 135 IPR002902 -
Gso1g2057 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Gso1g2057 669 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 667 - -
Gso1g2057 669 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 667 - -
Gso1g2057 669 Gene3D Transferase(Phosphotransferase) domain 1 424 627 - -
Gso1g2057 669 Gene3D Phosphorylase Kinase; domain 1 308 423 - -
Gso1g2057 669 CDD STKc_IRAK 354 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g2057 Gso-Chr1 56943734 56946915 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g2057 27 669 Receptor kinase-like Gene Family AT4G05200 54.128 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso1g2057 PK_Tyr_Ser-Thr 2.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g2057 - - gmx:100305391 1262.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2057 1 56943734 56946915 Gso20g1096 20 40742906 40746428 PCT