Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g2056 ATGTTTGGGGCAAAAGCTGATCGATGTGATATTGGGATCATGGTCGCTATGCTTTTGTTCATGATCTTGTCACTAAACGGTGTTGTTTCTGGTGCAGACCCTATTGATACCTATTGTCCCAGTGAATTCCCATTGTACAGCCTCAACAGTTCATTCCATAACAACCTCAAGCTTGTGCTGAGGTTGCTTTCCTCCGACAACGCTTCAAAGGCAGGTTTCTATGACACATCCATAGGACAAGGCCCAGACAAAGTGTACGGACAATCACTTTGCAGAGGGGACATCTCCAACTCCACAGCTTGCAAAGAATGCATTGAGAAAGCAAGCCGAGATATCATGAATAGGTGCAAGAGTGAGAATGCAATGATATGGTATAACCTTTGCCAAGTACGTTACTCCTTTCAGAGCTTTAAGGTCGTGGCTTATACTGGAAAGTATCCGCAGCAGAATAATGAGGAGAAGAAAGTATCGGATCCTATAAGATTTAGGGAATACTTGACATATTTAATGAGCAATCTCTCAGACGAGGCTGCTTTCAATCCTGATAAGAACATGTTTGCAGCTGGGGAAGTTGACTATCCTGGGAACAAGACAATATATGGCTTAGTCCAATGTATTCCAGACTCACAGTGCAGTAGTTGTTTGACTTCTGCCTTCACAGAACTCACTGAATGCTGCTCCGACCTCGAAGCTGGGATAATTCTTGATCGGACTTGCAATATCAGGTTCCAGTTGTCTCAGTTCTTCAATGCTTCATCTGCATATCGCTTGATTTATCCAACTTCCACAGGAGGGAAATGGAAGTCCTGGATGATTGTGTTGATTATGTGTGGATCAGTTTTAGTATTAGCACTTCTTATTGGGTTGGCCACTGCTTGCCTCAGACGAAAGAACGATAGAGAGAGAGATGAAGAAATAAGTGAACGAACGCTATTACAAGAGTTGTCTACCCCCAAGAGTGTAGCAGTCACAGAAGAAGGTGACTTGATTAGTTCCGATGAACTCTTGTTCATGACTTTAGCTGTCATTAAGGCCGCTACTGATGACTTTTCTGATACAAATAAGCTGGGACAAGGAGGCTTTGGTGCAGTCTACAAGGGTGTTCTACCAGATGGTAATGAAATAGCAGTTAAAAGATTATCGAGAAAGTCATGGCAAGGCATGGAGGAATTGAAAAATGAGGTCATATTGATTGCCAAACTTCAACACAAGAATTTGGTGAGGCTGTTAGGGTGTGCCTTGGAGGGGGATGAAAAGCTACTCATATATGAATTCATGTCAAACAAAAGCCTTGATCAATTTATCTTTGATCCAGAAAAGCGTTCAAAACTTGATTGGAAGACATACCATGGCATTATCAGTGGCATAGCCAGAGGACTACTTTATCTTCACGAGGAGTCTCGCCTTAAAATCATTCACAGAGACTTAAAGCCAAACAATGTGTTGTTAGACCACGAACTGTTGGCCAAAATATCAGATTTTGGTATGGCCAGGATATTTTCTGAGAATCAAAATGCAGCAAACACGAAAAGAGTTGTGGGAACATATGGATATATGGCTCCAGAGTATGCAATGGAAGGGTTGTTCTCTGTGAAATCTGATGTCTTCAGCTTTGGTGTTATCATGCTTGAAATCATCATCGGGAAAAGAAATAGTGGCTTTTACATGACCGAACTTGCCCCGACACTGCTGGCATATGCATGGAGACTGTGGAATGAAGGAAAAGAATTGGACTTTGTGGATCCAATGCTATTGGAATCATGTGATGCCTCGGAAATTGTAAGGTGTGTGCACATCGGGCTGCTGTGCGTGCAAGAAAATCCGGAACACAGGCCCACCATGTCAAATGTGGTGGTGCTCCTGGGAAGCGAATCAATGGTTCTTCCCCAACCAAGACAACCACCACTTTCTTTGGGTAGGGTGCTTCGTGCCGATCCATCAACAACAACCAATCCTTCAGTGAAAGAGATGATATTTTCTGATATTCTACCGCGATGA 1998 0.4294 MFGAKADRCDIGIMVAMLLFMILSLNGVVSGADPIDTYCPSEFPLYSLNSSFHNNLKLVLRLLSSDNASKAGFYDTSIGQGPDKVYGQSLCRGDISNSTACKECIEKASRDIMNRCKSENAMIWYNLCQVRYSFQSFKVVAYTGKYPQQNNEEKKVSDPIRFREYLTYLMSNLSDEAAFNPDKNMFAAGEVDYPGNKTIYGLVQCIPDSQCSSCLTSAFTELTECCSDLEAGIILDRTCNIRFQLSQFFNASSAYRLIYPTSTGGKWKSWMIVLIMCGSVLVLALLIGLATACLRRKNDRERDEEISERTLLQELSTPKSVAVTEEGDLISSDELLFMTLAVIKAATDDFSDTNKLGQGGFGAVYKGVLPDGNEIAVKRLSRKSWQGMEELKNEVILIAKLQHKNLVRLLGCALEGDEKLLIYEFMSNKSLDQFIFDPEKRSKLDWKTYHGIISGIARGLLYLHEESRLKIIHRDLKPNNVLLDHELLAKISDFGMARIFSENQNAANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVIMLEIIIGKRNSGFYMTELAPTLLAYAWRLWNEGKELDFVDPMLLESCDASEIVRCVHIGLLCVQENPEHRPTMSNVVVLLGSESMVLPQPRQPPLSLGRVLRADPSTTTNPSVKEMIFSDILPR* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g2056 665 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 663 - -
Gso1g2056 665 Pfam Protein tyrosine and serine/threonine kinase 353 619 IPR001245 GO:0004672|GO:0006468
Gso1g2056 665 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 15 663 - -
Gso1g2056 665 SMART serkin_6 350 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g2056 665 ProSiteProfiles Protein kinase domain profile. 350 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g2056 665 SUPERFAMILY Protein kinase-like (PK-like) 332 620 IPR011009 -
Gso1g2056 665 Pfam Salt stress response/antifungal 154 244 IPR002902 -
Gso1g2056 665 Pfam Salt stress response/antifungal 46 134 IPR002902 -
Gso1g2056 665 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Gso1g2056 665 Gene3D Phosphorylase Kinase; domain 1 326 425 - -
Gso1g2056 665 ProSiteProfiles Gnk2-homologous domain profile. 33 137 IPR002902 -
Gso1g2056 665 Gene3D - 36 137 IPR038408 -
Gso1g2056 665 Gene3D - 145 248 IPR038408 -
Gso1g2056 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Gso1g2056 665 ProSiteProfiles Gnk2-homologous domain profile. 144 248 IPR002902 -
Gso1g2056 665 Gene3D Transferase(Phosphotransferase) domain 1 426 627 - -
Gso1g2056 665 CDD STKc_IRAK 356 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g2056 Gso-Chr1 56938412 56942517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g2056 35 634 Receptor kinase-like Gene Family AT4G23230 42.834 1.79e-169 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso1g2056 PK_Tyr_Ser-Thr 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g2056 - - gmx:102669229 1332.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2056 1 56938412 56942517 Gso20g1104 20 40848533 40852264 PCT
Gso1g2056 1 56938412 56942517 Gso10g2263 10 49692901 49696346 PCT