Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g2055 ATGATTCATTCTCTAATGATTTCAAAACCCATTCAATTGCTCCTTCTTTGCACTTTTGCTTTATTTTCAGACGTTGTATTTGCCGATCCACCGTATAATATTTGTTCCACAAGCATCAGTTATGCAAAAGACAGTTCCTTTGAAAACAATCTAACGAACCTCCTTTCCTCTTTATCCTCCAATGCTTCAATCTCCAAATTCTATAATACTTCTAATGGGATTGGCCCAGATAGAGTTTATGGCCTCTACATGTGCCTCGACTATATTACAAATGAATCTTGCAAGACATGCATCACGACAGCAACAGAGGACATTGTCAAACTCTGTCCTCTAGCCACAGAAGCAGTTGTATGGGAGGAGTTTTGTCTATTACGTTATTCCAACAGCAATTTCATTGGTAGTTTGAATGTCACAGGGAACATTGGCTTAGATAATAAACAGAATCTTTCAGAGCCAGAGAAATTTGAGTCTGCTGTGAATCAGACAATAAGTAATCTTACTAAGGTAGCATCTTTTGGTGTTTCGGCAAACATGTATGCTACTGGAGAAGTCCCCTTTGAAGATGAAACAATATATGCCTTAGTGCAGTGCACCAGAGATTTAATTGCCAGTGATTGTAGTAGGTGCCTGCAAAGTGCCATTGGAGATATACCAGGTTGCTGCTATGCCTCCATTGGGGGTAGAGTTCTGAGCCGTAGCTGTTATTTGAGGTATGAATTTTATGCCTTTTATCATGGTGCAACAGGACCCACGAATTCTACAACTGGCAAAAAAGAAAGCAAAAATAATTCAAGCAAACTATGGATGATTACAGGAATTATAGTCGTGGTAGGCTTGGTGATAGTATTTGTCATTTTCGGACTGTACCTTGTCGGGATTAAAAGAAAACGGCAGAGTAAGAATGGAATAGACAATCATCAAATCAGTCTTGGATCTCTTCGCGTGGCTACCAATAATTTTTCTGATTTGAATAAGCTCGGACAAGGTGGCTTTGGCCCTGTTTACAAGGGGAAACTTAGAGATGGCCAAGAGGTTGCAATCAAGAGGCTCTCAACTTGCTCTGAACAAGGCTCAGAGGAATTCATAAACGAGGTTCTTCTGATAATGCAACTTCAACACAAAAATCTTGTAAAGCTTCTTGGATTTTGTGTAGATGGAGAAGAGAAGCTTCTTGTGTATGAATTTTTACCCAATGGCAGTCTTGATGTGGTACTCTTCGATCCAAAACAACGTGAAAGACTAGATTGGACTAAACGCCTGGATATAATAAATGGAATAGCAAGGGGGATACTTTATCTTCATGAAGATTCTCGACTGAAAATAATTCATAGAGACCTAAAAGCAAGTAATGTATTGTTGGACTATGACATGAATCCAAAGATCTCAGACTTTGGAATGGCAAGGATATTTGCAGGAAGTGAAGGTGAAGCTAACACTGCTACAATAGTTGGCACATATGGTTATATGGCTCCAGAGTATGCAATGGAGGGATTATATTCCATAAAGTCTGATGTTTTTGGGTTTGGTGTACTATTGCTGGAGATAATTACAGGGAAACGTAACGCGGGTTTCTATCACTCTAACAAGACTCCAAGCCTTCTATCATATGCATGGCATCTATGGAATGAAGGAAAGGGGTTGGAACTAATTGATCCCATGTCAGTTGATTCATGCCCCGGAGATGAGTTTTTGAGATACATGCATATTGGATTGCTATGTGTTCAAGAAGATGCATATGATAGGCCAACCATGTCTTCAGTTGTTTTGATGTTGAAGAACGAATCAGCAACGCTAGGCCAACCAGAACGACCACCTTTCTCTCTTGGCAGATTCAATGCTAATGAGCCAGATTGCCAAGACTGCTCACTCAATTTCTTGACTCTGTCAGATATAGTGCCCCAGTGA 1905 0.4 MIHSLMISKPIQLLLLCTFALFSDVVFADPPYNICSTSISYAKDSSFENNLTNLLSSLSSNASISKFYNTSNGIGPDRVYGLYMCLDYITNESCKTCITTATEDIVKLCPLATEAVVWEEFCLLRYSNSNFIGSLNVTGNIGLDNKQNLSEPEKFESAVNQTISNLTKVASFGVSANMYATGEVPFEDETIYALVQCTRDLIASDCSRCLQSAIGDIPGCCYASIGGRVLSRSCYLRYEFYAFYHGATGPTNSTTGKKESKNNSSKLWMITGIIVVVGLVIVFVIFGLYLVGIKRKRQSKNGIDNHQISLGSLRVATNNFSDLNKLGQGGFGPVYKGKLRDGQEVAIKRLSTCSEQGSEEFINEVLLIMQLQHKNLVKLLGFCVDGEEKLLVYEFLPNGSLDVVLFDPKQRERLDWTKRLDIINGIARGILYLHEDSRLKIIHRDLKASNVLLDYDMNPKISDFGMARIFAGSEGEANTATIVGTYGYMAPEYAMEGLYSIKSDVFGFGVLLLEIITGKRNAGFYHSNKTPSLLSYAWHLWNEGKGLELIDPMSVDSCPGDEFLRYMHIGLLCVQEDAYDRPTMSSVVLMLKNESATLGQPERPPFSLGRFNANEPDCQDCSLNFLTLSDIVPQ* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g2055 634 SMART serkin_6 320 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g2055 634 ProSiteProfiles Gnk2-homologous domain profile. 137 243 IPR002902 -
Gso1g2055 634 CDD STKc_IRAK 326 593 - -
Gso1g2055 634 SUPERFAMILY Protein kinase-like (PK-like) 305 617 IPR011009 -
Gso1g2055 634 Gene3D Transferase(Phosphotransferase) domain 1 396 601 - -
Gso1g2055 634 Gene3D Phosphorylase Kinase; domain 1 291 395 - -
Gso1g2055 634 Pfam Protein tyrosine and serine/threonine kinase 324 589 IPR001245 GO:0004672|GO:0006468
Gso1g2055 634 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 26 32 IPR002052 GO:0003676|GO:0008168|GO:0032259
Gso1g2055 634 Gene3D - 30 131 IPR038408 -
Gso1g2055 634 Gene3D - 141 243 IPR038408 -
Gso1g2055 634 ProSiteProfiles Protein kinase domain profile. 320 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g2055 634 ProSiteProfiles Gnk2-homologous domain profile. 29 131 IPR002902 -
Gso1g2055 634 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 58 631 - -
Gso1g2055 634 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 58 631 - -
Gso1g2055 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Gso1g2055 634 Pfam Salt stress response/antifungal 147 240 IPR002902 -
Gso1g2055 634 Pfam Salt stress response/antifungal 35 128 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g2055 Gso-Chr1 56932976 56935827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g2055 26 608 Receptor kinase-like Gene Family AT4G05200 44.822 3.81e-179 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso1g2055 PK_Tyr_Ser-Thr 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g2055 - - gmx:102669364 1253.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2055 1 56932976 56935827 Gso11g0025 11 195102 198357 GST