Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g2050 ATGTTTGACACAAACATGTTTGATTCTCACCCTCACTTGCTTGATATGTCACCACCCCACAAGACTACTTGCTCTGAGAGTGATTTGGCAAAGCCCTGCAGAGATGATGAGTACGAGACCAAATCTATCACTGACACCATGGACGCTCCTTCTGGCGACGACCAAGATCCCAACCCGCGACCCAAAAAGAAGGGTTACCGCCGCCACACACAGCGCCAAATTGAAGAAATGGAAGCCTTCTTCAAGCAGTGTCCTCACCCGGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACTCAACATGAACGAAATGAAAATGCTATTTTGAAGGCAGAGAATGAAAAGCTTCGCGCTGAGAACAGCAGGTACAAGGAGGCCCTAACCAATGCTACATGCCCCAACTGTGGAGGCCCAGCTGCTCTTGGCGAAATGTCCTTCGACGAGCAACACTTGAGGATTGAGAATGCTCGGTTAAGAGAAGAGATCGATAGGATTTCAGGAATTGCTGCCAAATATGTTGGAAAGCCAGTGACTTCTTCGTACTCCAACCTCTCATCTCTGAATAACAACCACGTGCCTGTCGGTAACTATGGATCACAATCAGGCACGGTAGGAGAAATGTATGGAGGCAGTGACCTTTTTAGGCCACTCCCAGCTCCTGCTGATGCTGACAAACCCATGATTGTGGAGCTTGCTGTTGCAGCTATGGAGGAACTCACAAGACTAGCTCAGGCTGGAGAGCCTTTGTGGGTCCCAAGCAACCACCATTCTGAGATTCTAAATGAAGATGAATACTTGAGGACTTTCCCTACTAGAGGTTTAGGACCCAAACCCTTGGGCTTGAGATCAGAAGCTTCAAGGGAATCCGTGGTGGTCATCATGAATCACATTAACCTTATTGATATCCTTATGGATGTGAATCAATGGTCAACTGTGTTTTGCGGTATTGTCTCGAGAGCATTGACCCTTGAAGTCCTTTCAACTGGAATAGCAGGAAACTACAACGGAGCCTTGCAAGTGATGTCATCTGAGTTCCAAGTCGCTTCACCACTTGTTCCTACTCGTGAGAACTATTTCGTAAGGTACTGTAAGCAGCAACCAGATGGGATATGGGCAGTGGTGGATGTTTCCTTGGATAATCTGCGACCCAGTACAATCTCAAGAAGCCGAAGAAGGCCCTCTGGTTGTTTAATTCAAGAATTGCCAAACGGTTACTCCAAGGTTACATGGATTGAACATGTGGAAGTGGATGATAGAGCAGTGCATAGCATATATAGAACTCTGGTTAATTCGGGCCTGGCCTTTGGAGCTAAACGCTGGGTAGCTACATTAGAAAGACAATGCGAACGTCTTGCCAGTTCAATGGCCAACAACATACCAGCAGGGGACCTCTGTGTGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGAGAATGGTAATGAGCTATTGCACTGGTGTTGGTGCTTCTACCGCGCATGCTTGGACAACGCTCTCCGCAACTGGATGTGATGATGTAAGGGTAATGACAAGAAAGAGCACCGACGAACCTGGCAGACCCCCCGGTATAGTGCTCAGTGCTGCCACTTCTTTTTGGCTTCCTGTTCCTCCAAAGAGGGTTTTTCATTTCCTACGTGATCAAAACTCAAGAAATGAGTGGGACATTCTCTCCAACGGGGGTCTAGTTCAAGAATTGGCACATATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAATAGTGCAAATTCAAGCCAAAGCAACATGCTGATACTTCAAGAGAGTTGCACAGATTCAACTGGCTCATATGTAGTTTATGCTCCTGTGGATATTGTTGCTATGAATGTTGTCTTGAGTGGAGGGGATCCAGACTATGTTGCCCTGCTCCCCTCGGGCTTTGCTATTCTACCTGATGGGCCTCCTGCATTAAACGGTGGGCCCATACATGATGTTGGGTCTGGAGGTTCTCTACTCACAGTTGCATTCCAGATCTTAGTTGATTCAGCCCCAACTGCAAAGCTATCTCTGGGTTCAGTCGCCACTGTTAACAGTTTAATTAAGTGCACAGTTGAAAGGATCAAAGTTGCAGTCATACGTGACAACACCACCTGA 2196 0.4722 MFDTNMFDSHPHLLDMSPPHKTTCSESDLAKPCRDDEYETKSITDTMDAPSGDDQDPNPRPKKKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERNENAILKAENEKLRAENSRYKEALTNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPVTSSYSNLSSLNNNHVPVGNYGSQSGTVGEMYGGSDLFRPLPAPADADKPMIVELAVAAMEELTRLAQAGEPLWVPSNHHSEILNEDEYLRTFPTRGLGPKPLGLRSEASRESVVVIMNHINLIDILMDVNQWSTVFCGIVSRALTLEVLSTGIAGNYNGALQVMSSEFQVASPLVPTRENYFVRYCKQQPDGIWAVVDVSLDNLRPSTISRSRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVHSIYRTLVNSGLAFGAKRWVATLERQCERLASSMANNIPAGDLCVITSAEGRKSMMKLAERMVMSYCTGVGASTAHAWTTLSATGCDDVRVMTRKSTDEPGRPPGIVLSAATSFWLPVPPKRVFHFLRDQNSRNEWDILSNGGLVQELAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVVYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPPALNGGPIHDVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKVAVIRDNTT* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g2050 731 CDD homeodomain 63 121 IPR001356 GO:0003677
Gso1g2050 731 SMART HOX_1 62 124 IPR001356 GO:0003677
Gso1g2050 731 Coils Coil 114 149 - -
Gso1g2050 731 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Gso1g2050 731 Gene3D - 50 136 - -
Gso1g2050 731 Gene3D - 317 473 IPR023393 -
Gso1g2050 731 MobiDBLite consensus disorder prediction 1 70 - -
Gso1g2050 731 MobiDBLite consensus disorder prediction 27 43 - -
Gso1g2050 731 SUPERFAMILY Homeodomain-like 47 120 IPR009057 -
Gso1g2050 731 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 728 IPR042160 -
Gso1g2050 731 CDD START_ArGLABRA2_like 245 469 - -
Gso1g2050 731 SUPERFAMILY Bet v1-like 242 472 - -
Gso1g2050 731 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 15 728 - -
Gso1g2050 731 SUPERFAMILY Bet v1-like 491 721 - -
Gso1g2050 731 Pfam Homeodomain 63 118 IPR001356 GO:0003677
Gso1g2050 731 SMART START_1 250 470 IPR002913 GO:0008289
Gso1g2050 731 Pfam START domain 251 470 IPR002913 GO:0008289
Gso1g2050 731 ProSiteProfiles START domain profile. 241 473 IPR002913 GO:0008289
Gso1g2050 731 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g2050 Gso-Chr1 56891672 56898886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g2050 1 728 Homeobox Transcription Factor Family AT4G21750 75.163 0.0 1151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso1g2050 START 2.9e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g2050 K09338 - gmx:100815499 1459.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2050 1 56891672 56898886 Gso11g0031 11 239685 247110 GST
Gso1g2050 1 56891672 56898886 Gso20g1136 20 41115471 41121678 PCT
Gso1g2050 1 56891672 56898886 Gso10g2241 10 49515695 49521683 PCT
Gso20g1136 20 41115471 41121678 Gso1g2050 1 56891672 56898886 PCT
Gso10g2241 10 49515695 49521683 Gso1g2050 1 56891672 56898886 PCT