Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g2042 ATGGAGCTTCAGAGGCGTCCAGATCAGTGCCTCCCGGTGAGGAAAGGGCTGAAGAGGAAGCTAGAGGAGGAGTTCGATGACGACCCACAGATCTCCGCTCCTCCCACCGGTGACGCTCGCGACGCCCTCCTCTCTGACGTTAAGGAACAGGTTTCCCTCCTCGATTCCAATTTCTCCTGGAACGAACACGATCGTGCCGCCGCCAAGCGCGCCACGCACGCCCTCGCCGATCTCGCCAAAAACGAGGAAGTCGTGAACGTGATTGTTGAAGGAGGCGCCATTCCGGCGTTGGTTAAGCATCTCCAAGCGCCTCCTCTGGCTGAAAGCGACCGTTTGCCGAGGCCAATGCCGTTCGAGCACGAGGTCGAGAAAGGGAGTGCTTTCGCGCTTGGACTTCTCGCTGTCAAGCCAGAGCATCAACAACTCATTGTTGACAGTGGTGCCTTAAAACATCTTGTTGATCTTTTGAAGAGGCATAAGAATGGCTTAACATCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCCATCACTAATCTTGCTCATGAGAACAGCAGCATTAAAACTCGTGTCAGGAAGGAAGGCGGGATTCCACCGCTTGTTCATTTGCTTGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCATTGCGAACCCTTGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCCCTTCCAACTCTTATTCTAATGCTTCGCTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTCATTGGAAATCTGGTCCACTCTTCCCCTGATATAAAGAAAGAAGTTCTTCTTGCTGGAGCCTTGCAACCTGTTATTGGACTACTTAGCTCCTGTTGCTCTGAAAGCCAGAGGGAAGCAGCATTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTTCAGAGAGGTGCTGTCCGACCTCTGATAGAGATGCTTCAGTCCTCTGATGTTCAGCTAAAAGAAATGTCTGCCTTTGCATTGGGGAGATTAGCCCAGGACACACATAACCAAGCTGGTATTGTGCACAATGGTGGTTTGATGCCATTACTGAAGCTTCTTGACTCCAAAAATGGCTCTTTGCAACATAATGCTGCATTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTAGGTGGAATTCAGAGACTGCAGGATGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTCATGGCCGAGTTCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAAAAGGCTTTTCAAAGGCGAGTTGCTTTAACTCTTGCTCACCTTTGCTCTGCAGATGATCAAAGAAAAATATTTATTGATTATAACGGTTTGGAGTTGCTTATGGGACTTCTTGGCTCTTATAACCCCAAGCAACAACTTGATGGAGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCTATGACTCTGTCTCCTGTAGATGCCGCACCCCCATCTCCAACACCCCAGGTGTATTTGGGAGAGCAGTATGTAAACAATGCTACCTTGTCTGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCACAGAATCTGCCTGCTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGAGGCACGGGACATAGAGATTCCAAACATTAGATGGGAGGTTTTTGAGCTGATGATGAGATTTATATACACTGGATCAGTAGATATCACTCTTGATATTGCCCAAGATCTCCTCCGAGCAGCTGATCAATATCTTTTAGAAGGACTTAAAAGACTATGCGAGTACACAATTGCACAGGATATATCACTGGAGAATGTGTCAAGTATGTATGAACTTTCAGAGGCCTTTAACGCTATATCATTGAGGCACACATGCATCCTTTTTATATTGGAGCACTATGATAAATTGGGTGGAAAGCCAGGACACTCTCAACTGATTCAGCATATAATACCCGAGATCCAGAATTACTTTGTTAAAGCCATTACAAAGGCCAATTCCAATATCCAGCCGTAA 2121 0.4526 MELQRRPDQCLPVRKGLKRKLEEEFDDDPQISAPPTGDARDALLSDVKEQVSLLDSNFSWNEHDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPLAESDRLPRPMPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRKEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPDIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSSDVQLKEMSAFALGRLAQDTHNQAGIVHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALTLAHLCSADDQRKIFIDYNGLELLMGLLGSYNPKQQLDGAVALCKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFIYTGSVDITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFILEHYDKLGGKPGHSQLIQHIIPEIQNYFVKAITKANSNIQP* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g2042 706 ProSiteProfiles BTB domain profile. 540 607 IPR000210 GO:0005515
Gso1g2042 706 CDD BTB_POZ_ARIA_plant 527 642 - -
Gso1g2042 706 Gene3D - 41 208 IPR011989 -
Gso1g2042 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 232 IPR000225 GO:0005515
Gso1g2042 706 Gene3D Potassium Channel Kv1.1; Chain A 521 669 IPR011333 -
Gso1g2042 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 148 IPR000225 GO:0005515
Gso1g2042 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Gso1g2042 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
Gso1g2042 706 Gene3D - 416 514 IPR011989 -
Gso1g2042 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 197 IPR000225 GO:0005515
Gso1g2042 706 SMART BTB_4 540 637 IPR000210 GO:0005515
Gso1g2042 706 SUPERFAMILY POZ domain 532 634 IPR011333 -
Gso1g2042 706 SMART arm_5 270 310 IPR000225 GO:0005515
Gso1g2042 706 SMART arm_5 81 135 IPR000225 GO:0005515
Gso1g2042 706 SMART arm_5 186 226 IPR000225 GO:0005515
Gso1g2042 706 SMART arm_5 136 184 IPR000225 GO:0005515
Gso1g2042 706 SMART arm_5 312 352 IPR000225 GO:0005515
Gso1g2042 706 SMART arm_5 468 508 IPR000225 GO:0005515
Gso1g2042 706 SMART arm_5 228 268 IPR000225 GO:0005515
Gso1g2042 706 SMART arm_5 353 393 IPR000225 GO:0005515
Gso1g2042 706 Pfam BTB/POZ domain 533 635 IPR000210 GO:0005515
Gso1g2042 706 SUPERFAMILY ARM repeat 64 410 IPR016024 -
Gso1g2042 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 2 702 IPR044282 -
Gso1g2042 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 365 IPR000225 GO:0005515
Gso1g2042 706 Gene3D - 209 414 IPR011989 -
Gso1g2042 706 SUPERFAMILY ARM repeat 436 510 IPR016024 -
Gso1g2042 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 2 702 - -
Gso1g2042 706 Pfam Armadillo/beta-catenin-like repeat 192 225 IPR000225 GO:0005515
Gso1g2042 706 Pfam Armadillo/beta-catenin-like repeat 312 351 IPR000225 GO:0005515
Gso1g2042 706 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g2042 Gso-Chr1 56829408 56836593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g2042 244 410 U-box Gene Family AT5G67340 28.571 1.23e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso1g2042 BTB 2.7e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g2042 - - gmx:100812456 1375.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2042 1 56829408 56836593 Gso11g0039 11 325154 333531 GST
Gso1g2042 1 56829408 56836593 Gso20g1147 20 41249925 41258474 PCT
Gso1g2042 1 56829408 56836593 Gso10g2230 10 49395010 49404323 PCT
Gso20g1147 20 41249925 41258474 Gso1g2042 1 56829408 56836593 PCT
Gso10g2230 10 49395010 49404323 Gso1g2042 1 56829408 56836593 PCT