Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g2035 ATGGAATCCGGGGTGAGATCGGGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAACTCATCTGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGGTTGAGTGCTACCGCTTCCACCTCTCGCAATCTCTATGAATCCAAGAAAAGGCCAAACATCAACGTGTCTGTGTCCTCGAGTGATTCTGGATCAAGCGACGAGTTGCTGATGCCTCCTGGTAGAAGGCTTGGTCCCGAGACCATTCGAGTTTGCAATGGTTTGGCTGCCTCTGAGCGAGGTGGGAGTGAAATTAGTCGGAAGAGGGATAGAGTGGAACGAATAAGCGGTAGTGGGGAGGACATTGCTGCGGAGAAAGGTTTGGAGCAGTGGGAAAGGAAGCGTAGTAAGTTGGATGTGTACGATTTCAATGAATACGATGGCATGGATGTGGAGAACATAAGGAGGAGGCATTTGGATGGTCATGGGGGAGGAAGGTTTATGGGATCAGTGCATGCTGCTAGAAGTGGCATTGATAGGGATTTCAGAACAGGGTCAAGTGGACGTGTTCTCGATAAGAGAAAGAACTCCTACGGTGACAAGCCTAATTGCTTGTATCCAGGGGATAATGTGGGTCACAGTAGGTTCAAAATGAACAAGGATGGAGCTCAGGTGCCTCCACTCTCACAGAGGGAGAAGTTTAATTCGGACGAGTCCATTAGGGTTCAGGGGAAGAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGGGTGGTCCATCAGAACAGTATTATGATCATCACAAACCCTTGGAAAGCAGGCTAAGGTTGAAGACTGAAGAGATGGCTAAGAGGTTGAAGACTGAAGAGGCTGCCAAGAGGTTGAAGACTGAGGGGACTTCCAAGAGGAATATTCCAATTCGTCCTTCCTCATACATCGATAAGAAACCTGTTGATAAACCAGCATTACATAAGAGGCCAGAGAAGAAAAGGATAGCATCAAGAAAATCATTGTCAAGCAAGGATAGTAAGGGTGATGAGGGGGATTCAGATAACAGTGACACATCATTGAATCCAAGAATAAGAAATACTGAAGCTCGTAAGTCTGTGAAAAAAATAATCTCTGAGGATGAGCAGACTCCTGTGCACCAAAAAACCCCAACCACAAGAACAAAAGAAGGAAAACTCAAGCGTGGTAGTGGTACAGAAAAACAAAAACTGCGGGAACAAATAAGGGAGATGCTGCTGAATTCAGGTTGGACGATAGACTATCGACCTCGGAGGAACAGAGACTACCTGGATGCTGTTTACATTAATCCAGCTGGTACAGCCTATTGGTCTATCATCAAGGCCTATGATGCTCTTCAAAAGCAATTGAATGATGATGCTGATGAGGTCAAGCCCAAAGGGGATAGTTCTTCTTTTGCTCCTATTGCAGATGAGGTTCTCAGTCAGTTAACAAGGAAAACTAGGAAGAAAATGGAGAAAGAATTGCAAAAGAAGAAGAAAAGGCATGATAGTGAAAGTGATAGTGAAAAAGAGCCTCAAAGGAAAAGATCTGCCAGCAACAAGCATAATATGAATAGCATGGATAGTGATAGCTACGAGGAGAAATTAAGCTCCTTTATAAAACAGGGAAATAAGTCAATGAAAAACAAAATGTTTGAAAATACCTCTATCAGTGCTCGCTCTAAAATCCAGAATGCTACCCATCACTCAAGTGATGGAATAGAAAAATCATTATTTGGATGTGATCCTCATATACATGGACGGAAGAGTAAAAAACATGGAAGATGTACTTTGTTAGTTCGCAGTTCTAACAAAGGATCAAATTCAGAATCTGATGGCTTTGTTCCATATACGGGCAAGCGGACAGTTCTTGCCTGGTTAATAGACTCTGGAACAGTAGAGTTAAGCCAAAAGGTTCAGTACCGCAGACGGAAGAAAGTCATGCTGGAGGGGTGGATCACAAGAGACGGCATTCACTGTGGCTGCTGTAGTAAGATCCTCACTGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCACAGCCACATCACAATATATATTTGGAATCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGAATAGACAAGAGCATGCTGAAAAAATTGGTTTCCATTCAGTGGATATTGATGGAAATGATCCAAATGATGATACTTGTGGTATTTGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGCTGTCCATCAACATTTCATCAGAGCTGCTTGGATATACAGATGCTTCCTCCTGGTGAATGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGCATAGCCAGTGGAACTTCTGATAAAGATGATGCATCTGTGAATATCCTACAGACTTGCATCTTATGTGAGAAAAAATATCACAACTCTTGCACTAAGGAGATGAATACCCTTCCTAATAAAATCAATTCATCAAGCCTTTCTTTTTGTGGGAAAGAGTGCAAAGAGCTTTCGGAACACTTGAAGAAATACCTTGGTACCAAACATGAACTAGAAGCAGGTTTTTCATGGTGTCTCATTCATAGATTAGATGAAGACTCAGAGGCAGCTTGCAGGGGACTTACCCAGAGGGTAGAATGCAATTCCAAGTTGGCCATTGCACTGACTGTGATGGATGAATGCTTTTTACCTGTTATTGATCGGAGGAGTGGGATCAATTTAATCCGTAATGTTTTATATAATAGTGGATCAAACTTTAGTCGGTTGAGCTATAGTGGCTTTTACACTGCTATTTTGGAGAGAGGGGATGAAATCATTGCTGCAGCATCTATCAGGTTCCATGGAACTAAGGTTGCAGAGATGCCATTCATTGGAACACGCCATATATATAGGCGCCAGGGGATGTGCCGCCGACTTTTTTCTGCCATTGAATTGGCCCTTTGCTCTCTGAAGGTTGAAAAACTAGTTATTCCTGCAATTGCTGAACTCACACATACATGGACAACAGTTTTTGGCTTCACATATCTAGATGAATCACTCAGGCAAGAAATGAAGTCACTGAATATGATGGTCTTCCCTGGTATAGATATGTTACAGAAGCTGTTAGTGGAACAAGGAAACCGTGAAGGTTCTGAGAAAATGGAAAATGGAAACAACGATTTTATCAAGACCAAAATGGGAAATAGGTCAGATATGGGTTTTTCAACTCCACAAGGTCCTCGTGGAAGTGATGATGTTAGTTCAAATCCTGCTAATGAGACAAATGATGAATGCAGCGATGCTTCTCAAGAACTATACAACCAAGTTTTGGTTGATGGGATTATCTGTTCCCAATCTCATTCTGAGGAAATGATGTCTGATCCAATTTCAGATAAATGTGATTCTCCTTCTAGAACTAGTCACAGTGAACTAGAAATGAAGAATAAAGTAGCGGCTGCTCCTCCTGTCGATAGATTAGATTCTTCTACCAAATGTCAATCCATTTATCCAATTGACAGTCACCCAGTAGATATTCTGAAAGTTCAAGCTTTGGTTCAGGAAACTGCTTGTTCTGATCCATGTCCAGCAGAAGAAAACCTTGACAAGAAGTGTCACTCATCCACTGCCATGAATTGTGATTCATCGGAGCTTGACATTAATCCAGTGTTGGATTCTGAAATGGCAGACAATACTCTGCCTACTAAAGAGGTTTGTATGAATGATGTTCTTGAAGTTGTTCCTTCCGGGAATATATCTGAAGATAATATTACAAAGGGGAATAATCGAAATGTAGATGAATCCAGTTCTGCTCTCAATCATGCTGATGAGAGTTTATTCCAAGTAGGATCTGATTCCAACGGTGAAATTGGGTGTGAGAATGAAAAGGATTTACTTTTAAACCCGGGAGTTGCTTCAAATGAAACAGATTTTGATGAAAGTGGCGTAAATGCTTCCGGTGATAGTTCCGAGACTGTCATAGTCTAA 3924 0.419 MESGVRSGGSGVVVKSRNSSGCLIVRKKGDGLSATASTSRNLYESKKRPNINVSVSSSDSGSSDELLMPPGRRLGPETIRVCNGLAASERGGSEISRKRDRVERISGSGEDIAAEKGLEQWERKRSKLDVYDFNEYDGMDVENIRRRHLDGHGGGRFMGSVHAARSGIDRDFRTGSSGRVLDKRKNSYGDKPNCLYPGDNVGHSRFKMNKDGAQVPPLSQREKFNSDESIRVQGKNGVLKVMVNKKKVGGPSEQYYDHHKPLESRLRLKTEEMAKRLKTEEAAKRLKTEGTSKRNIPIRPSSYIDKKPVDKPALHKRPEKKRIASRKSLSSKDSKGDEGDSDNSDTSLNPRIRNTEARKSVKKIISEDEQTPVHQKTPTTRTKEGKLKRGSGTEKQKLREQIREMLLNSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDADEVKPKGDSSSFAPIADEVLSQLTRKTRKKMEKELQKKKKRHDSESDSEKEPQRKRSASNKHNMNSMDSDSYEEKLSSFIKQGNKSMKNKMFENTSISARSKIQNATHHSSDGIEKSLFGCDPHIHGRKSKKHGRCTLLVRSSNKGSNSESDGFVPYTGKRTVLAWLIDSGTVELSQKVQYRRRKKVMLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPHHNIYLESGVSLLQCQIDAWNRQEHAEKIGFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGIASGTSDKDDASVNILQTCILCEKKYHNSCTKEMNTLPNKINSSSLSFCGKECKELSEHLKKYLGTKHELEAGFSWCLIHRLDEDSEAACRGLTQRVECNSKLAIALTVMDECFLPVIDRRSGINLIRNVLYNSGSNFSRLSYSGFYTAILERGDEIIAAASIRFHGTKVAEMPFIGTRHIYRRQGMCRRLFSAIELALCSLKVEKLVIPAIAELTHTWTTVFGFTYLDESLRQEMKSLNMMVFPGIDMLQKLLVEQGNREGSEKMENGNNDFIKTKMGNRSDMGFSTPQGPRGSDDVSSNPANETNDECSDASQELYNQVLVDGIICSQSHSEEMMSDPISDKCDSPSRTSHSELEMKNKVAAAPPVDRLDSSTKCQSIYPIDSHPVDILKVQALVQETACSDPCPAEENLDKKCHSSTAMNCDSSELDINPVLDSEMADNTLPTKEVCMNDVLEVVPSGNISEDNITKGNNRNVDESSSALNHADESLFQVGSDSNGEIGCENEKDLLLNPGVASNETDFDESGVNASGDSSETVIV* 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g2035 1307 MobiDBLite consensus disorder prediction 324 344 - -
Gso1g2035 1307 SMART PHD_3 722 763 IPR001965 -
Gso1g2035 1307 SMART PHD_3 764 822 IPR001965 -
Gso1g2035 1307 Coils Coil 475 502 - -
Gso1g2035 1307 MobiDBLite consensus disorder prediction 1028 1080 - -
Gso1g2035 1307 SUPERFAMILY FYVE/PHD zinc finger 708 765 IPR011011 -
Gso1g2035 1307 MobiDBLite consensus disorder prediction 32 64 - -
Gso1g2035 1307 MobiDBLite consensus disorder prediction 28 77 - -
Gso1g2035 1307 ProSiteProfiles Zinc finger PHD-type profile. 720 765 IPR019787 -
Gso1g2035 1307 MobiDBLite consensus disorder prediction 477 531 - -
Gso1g2035 1307 MobiDBLite consensus disorder prediction 1286 1307 - -
Gso1g2035 1307 CDD NAT_SF 918 977 - -
Gso1g2035 1307 MobiDBLite consensus disorder prediction 1041 1080 - -
Gso1g2035 1307 CDD PHD2_CHD_II 723 762 - -
Gso1g2035 1307 ProSitePatterns Zinc finger PHD-type signature. 723 762 IPR019786 -
Gso1g2035 1307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 712 837 IPR013083 -
Gso1g2035 1307 MobiDBLite consensus disorder prediction 1103 1122 - -
Gso1g2035 1307 MobiDBLite consensus disorder prediction 1285 1307 - -
Gso1g2035 1307 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1214 - -
Gso1g2035 1307 MobiDBLite consensus disorder prediction 513 531 - -
Gso1g2035 1307 MobiDBLite consensus disorder prediction 355 370 - -
Gso1g2035 1307 Pfam PHD-finger 723 765 IPR019787 -
Gso1g2035 1307 Pfam Tify domain binding domain 645 695 IPR032308 -
Gso1g2035 1307 PANTHER PHD FINGER FAMILY PROTEIN 1 1214 - -
Gso1g2035 1307 MobiDBLite consensus disorder prediction 379 395 - -
Gso1g2035 1307 MobiDBLite consensus disorder prediction 279 395 - -
Gso1g2035 1307 MobiDBLite consensus disorder prediction 1105 1122 - -
Gso1g2035 1307 MobiDBLite consensus disorder prediction 491 512 - -
Gso1g2035 1307 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 909 979 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g2035 Gso-Chr1 56758916 56766564 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g2035 4 1044 PHD Transcription Factor Family AT4G14920 49.907 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso1g2035 TDBD 2.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g2035 - - gmx:102666194 2558.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2035 1 56758916 56766564 Gso11g0047 11 409652 417754 GST