Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g2034 ATGGAATCCGGCTTGAGATCGGGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAGCTCATCTGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGGTTGGGTGCTACTGCTTCCACCTCTCGCAAGCTCTATGAATCCAAGAAAAGGCCAAACATCAACGTGTCATTGAGTGATTCTGGATCAAGCGAGGGGTCACTAATACCTCCTGGTAGAAGGCTTGGTCCCGAGACTATTCGAGTTTGCAATGGTTTGGCTGCCTCTGAGCGGGGTGGGACTGAAATTAGTCGAAAGAGGGATAGAGTACAACGAATTAAGGGTAATGGGGAGGGTATTGCTGCGGAGAAAGGGTTGGAGCAGTGGGAAAGAAAGCGTAGTAAGTTGGGTGTGTACGATTTTGATGATTACGATGGCATGGATTTGGAGAACATGAGGAGGAGGCATTTGGATGGTCATGGAGGAGGAAGCTTTATGGGATCAGTGCATGCTGCTAGAAGTGGCATTGATAGGGAATTCATAACAGGTTCAAGTGGACGAATTCTTGATAAGAGAAAGAACTCTTACGGTGACAGACCTAGTGGCTTGTATCTGGGAGATAATGTTGATCACAGTAGGTACAAGATAAACAGGGATGGAGTCTGGGTACCTCTACGCTTGCAGAGGGATAAGTTTAATTCAGATGAGTCGATTAGGGTTCAGGGGAAGAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGGGTGGTCCATCAGAACAGGATTATGATCATCACAAACCTGTGGAAGGCAGGCAAAGGTTGAAGACTGAAGAGACTGCTAAGAGGTTGATGACTGAAGAGACTGCCAAGAGGTTGAAGACTGAAAAGGCTGCCAAGAGGAATGTTCCAATTCGTCCTTTGTCATACTTGGAAACAAAACCTGTTGAGAAACCAGGATTACTCAAGAGGCCAGAGAATAAAAGGATAGCATCAAGAAAATCGTTGTCAAGCAAGGACAGTAAGGGTGATGAGGGGGATTCAGATAACAGTGACACATCATTGAATTTGGGAATAAGAAATACTGAAGCACGGAAGCCAGCAAAAAATGTAATGTCTGAGGATGAGCAGACTCCTGTGCATGAAAAACTCCCAACCACAAGAACAAAAGAAGGAAAAATCAAGCGTGGAAGTGGTACAGAAAAACAGAAACTGCGGGAACGAATAAGGGAGATGCTGCTGAATTCAGGTTGGACCATAGACTATCGACCTAGAAGGAACAGGGACTATCTGGATGCAGTTTACATTAATCCAGCAGGTACAGCTTATTGGTCTATCATCAAGGCCTACGAAGCACTTCAAAAGCAATTGAATGAAGATGCTAATGAGGCCAAGCCCAAAGGGGATAGTTCTTCTTTTGCTCCTATTGCAGATGAGGTGCTCAATCAGCTAACAAGGAAAACTAGGAAGAAAATGGAGAAAGAATTGAAAAAGAAGAAAAAATATGATAGTGAAAGTGATAATGAAAAAGAGCCTCAAATAAGAAGATCTGCCAGCAACAAGCGTGATTTGAATAGCACAGATAGTGATAACAATGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGGAGTAAGTCAATGAAAAATAAAATGTTTGAAGATACCATTATGAGTGCTTCCTCTAAAATCCAGAATGCTACCAATCACTCAGGTGATGGAATAGAAAAATCATTATTTGAATGTGATCCTCAGATACACGGACGGAAGAGTAAAAAACATGGAAGATGTACCTTGTTAGTTCGCAGTTCTAAGAAAGGATCAAATTCAGAATCTGATGGCTTTGTACCATATATGGGCAAACGAACGGTTCTTTCATGGTTGATTGACTCTGGAACAGTAGAGTTAAGCCAAAAGGTTCAGTACCGCAGACGGAAGAAAGTCATGCTGGAGGGGTGGATCACAAGAGATGGCATTCATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCACGCAGGAAGCAAATTGCCACAGCCATATCAAAATATATATTTGGAATCTGGAGTTTCTCTTCTACAGTGCCAGATAGAGGCATGGAATAGACAAGAGCATTCTGAAAAAATATGTTTCCATTCAGTGGATATTGATGGCGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCCACATTTCATCAGAGCTGCTTGGATATACAGATGCTTCCTCTGGGTGAATGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGCATAGCCAGTGGGAATTCTGAAAAAGATGATGCATCTGTGTATGTCCTACAAATTTGCAACTTATGTGAGAAAAAATATCATGACTCTTGCACTAAGGAGATGGATAACCTTCCTAATAACATCAATACATCAAGCCTTTCTTTTTGTGGGAAAGAGTGCAAAGAGCTTTCTGAACACTTGAAGAAATACCTTGGTACCAAGCATGAGCTGGAAGCCGGTTTTTCATGGTCTCTCATTCATAGGATAGACGAAGACTCAGAGGCAGCTTGCAGGGGTATTAGCCAGAGGGTAGAATGCAATTCCAAGTTGGCTATTGCACTGACTGTGATGGATGAATGTTTTTTACCTGTTATTGATCGAAGGAGTGGGATCAATTTAATCCGTAACGTTTTATATAATAGTGGATCAAACTTTAGTCGGTTGAACTATAGTGGCTTTTACACTGCTACTTTGGAGAGAGGGGATGAAATCATTGCTTCAGCATCTATCAGGTTCCATGGAACTCAGATAGCAGAGATGCCATTTATCGGAACTCGCCATATGTATAGGCATCAGGGGATGTGCCGCCGGCTTTTTTCTGCCATTGAATCGACACTTTGCTCTCTAAAGGTTGAAAAACTAGTTATTCCTGCAATTGCTGAACTCACAAATACATGGACAACAGTTTTTGGCTTCACACATCTGGACGAATCACTCAGGCAAGAAATGAAGTCACTGAATATGATGGTCTTCCCCGGTATAGATATGTTAATGAAGCCGTTAGCGGAACAAGGAAACCATGAGGGTAATAAAACCACAGGTTCTGAGAAATTGGAAAATGGAGACAATGATTTTATCAAGACCAAAATGGAAAATAAGTCAGATATGGGTTCTTCGACTCCACAAGATCCTCATGGAAGTGATGATATTAGTTCAAGTCTTGCTAATGAGATGAATGATGAATGCAGTGACGCTTCTCAAGAACTAAACAACCAAGTTTTGGTTGATGGCATTATCTGTTCCAAATCTCATTCTGGGGAAATGATGTCTGATCCAGTTTCAGATAGATGTATTTCTCTTTCTAGAACTAGTCACAGTGAACTAGAAATGAAGAATAAAGTAGTGGCTGCTCCTCCTGTCGATAGATTAAATTCTTCGGCCAAATGTCAATCCATTTCTCCGATTGACACTTCTGTTAGTAGTCACCCAGTAGATATTCTGAAAGTTCAAACTTTGGTTCAGGAAACTACTTGTTCTGATCCATGTCCAGCAGAAGAAAACCTTGACAAGAAGTGTCACTCGTCCACTGCTATGAATTGTGATTCATCGGAGCTTGACATTAATCCAGTGTTGGATTCTGAAATGGCGAACAATACTCTGCCTACTAAAGAGGTTTGTATGAATGACACTCTTGAAGTTGTTCCTTCAGGAAATATATCTGAAGAGAATATTATAAAGGGGAATAATCGAAATGTAGGTGAATCCAGTTCTGCTCTCAATCATGCTAATGAAAGTTTGTTGCAAGTAGGATCTGTTTCCAACGGTGAAATTGGATGTGAGAATGAAAAGGATTTAAGTTTGAACCCAATAGTTGCTTCAAATGAAATGTATTTTGATGAAAGTGGCATAAATGCTTTCGGTGATAGTTCCGAGACTGTTCTGGTCTAA 3942 0.4122 MESGLRSGGSGVVVKSRSSSGCLIVRKKGDGLGATASTSRKLYESKKRPNINVSLSDSGSSEGSLIPPGRRLGPETIRVCNGLAASERGGTEISRKRDRVQRIKGNGEGIAAEKGLEQWERKRSKLGVYDFDDYDGMDLENMRRRHLDGHGGGSFMGSVHAARSGIDREFITGSSGRILDKRKNSYGDRPSGLYLGDNVDHSRYKINRDGVWVPLRLQRDKFNSDESIRVQGKNGVLKVMVNKKKVGGPSEQDYDHHKPVEGRQRLKTEETAKRLMTEETAKRLKTEKAAKRNVPIRPLSYLETKPVEKPGLLKRPENKRIASRKSLSSKDSKGDEGDSDNSDTSLNLGIRNTEARKPAKNVMSEDEQTPVHEKLPTTRTKEGKIKRGSGTEKQKLRERIREMLLNSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYEALQKQLNEDANEAKPKGDSSSFAPIADEVLNQLTRKTRKKMEKELKKKKKYDSESDNEKEPQIRRSASNKRDLNSTDSDNNEEKLSSFIKQGSKSMKNKMFEDTIMSASSKIQNATNHSGDGIEKSLFECDPQIHGRKSKKHGRCTLLVRSSKKGSNSESDGFVPYMGKRTVLSWLIDSGTVELSQKVQYRRRKKVMLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQIEAWNRQEHSEKICFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPLGEWHCPNCTCKFCGIASGNSEKDDASVYVLQICNLCEKKYHDSCTKEMDNLPNNINTSSLSFCGKECKELSEHLKKYLGTKHELEAGFSWSLIHRIDEDSEAACRGISQRVECNSKLAIALTVMDECFLPVIDRRSGINLIRNVLYNSGSNFSRLNYSGFYTATLERGDEIIASASIRFHGTQIAEMPFIGTRHMYRHQGMCRRLFSAIESTLCSLKVEKLVIPAIAELTNTWTTVFGFTHLDESLRQEMKSLNMMVFPGIDMLMKPLAEQGNHEGNKTTGSEKLENGDNDFIKTKMENKSDMGSSTPQDPHGSDDISSSLANEMNDECSDASQELNNQVLVDGIICSKSHSGEMMSDPVSDRCISLSRTSHSELEMKNKVVAAPPVDRLNSSAKCQSISPIDTSVSSHPVDILKVQTLVQETTCSDPCPAEENLDKKCHSSTAMNCDSSELDINPVLDSEMANNTLPTKEVCMNDTLEVVPSGNISEENIIKGNNRNVGESSSALNHANESLLQVGSVSNGEIGCENEKDLSLNPIVASNEMYFDESGINAFGDSSETVLV* 1314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g2034 1313 MobiDBLite consensus disorder prediction 358 394 - -
Gso1g2034 1313 ProSitePatterns Zinc finger PHD-type signature. 720 759 IPR019786 -
Gso1g2034 1313 PANTHER PHD FINGER FAMILY PROTEIN 1 1220 - -
Gso1g2034 1313 MobiDBLite consensus disorder prediction 1049 1082 - -
Gso1g2034 1313 Pfam PHD-finger 720 762 IPR019787 -
Gso1g2034 1313 MobiDBLite consensus disorder prediction 49 63 - -
Gso1g2034 1313 MobiDBLite consensus disorder prediction 246 267 - -
Gso1g2034 1313 MobiDBLite consensus disorder prediction 308 340 - -
Gso1g2034 1313 MobiDBLite consensus disorder prediction 43 72 - -
Gso1g2034 1313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 708 801 IPR013083 -
Gso1g2034 1313 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1220 - -
Gso1g2034 1313 MobiDBLite consensus disorder prediction 488 521 - -
Gso1g2034 1313 SMART PHD_3 719 760 IPR001965 -
Gso1g2034 1313 SUPERFAMILY FYVE/PHD zinc finger 708 765 IPR011011 -
Gso1g2034 1313 MobiDBLite consensus disorder prediction 248 267 - -
Gso1g2034 1313 CDD PHD2_CHD_II 720 759 - -
Gso1g2034 1313 ProSiteProfiles Zinc finger PHD-type profile. 717 762 IPR019787 -
Gso1g2034 1313 Pfam Tify domain binding domain 642 693 IPR032308 -
Gso1g2034 1313 MobiDBLite consensus disorder prediction 307 394 - -
Gso1g2034 1313 MobiDBLite consensus disorder prediction 475 528 - -
Gso1g2034 1313 MobiDBLite consensus disorder prediction 1050 1082 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g2034 Gso-Chr1 56749911 56757614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g2034 4 1046 PHD Transcription Factor Family AT4G14920 50.187 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso1g2034 TDBD 2.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g2034 - - gmx:100814247 2483.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2034 1 56749911 56757614 Gso11g0048 11 418599 426534 GST