Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g2020 ATGGACACGCCAGAGAGGAACCAGATCACCTCTACTCTCTCTAAGTTTGAGGATTCACCTGTTTTCAACTATATCAATAGTTTATCTCCTATAAAGCCCGTTAAGTCTGTTCCCATCAGTCAGACTTTCAATTCACTGAGCTTTTCGTCCCCTCCATCGGTTTTCACATCACCCCATGTCAGCTGTCTCAAGGAATCTAGATTCCTCCGGAGACATAACCCGTTGGGCACATCAAAGCCTAAGGTTCCTTCTGAAGATGTAATTAAAGTTCACTCAAGTGAAGAGACTCTTGCAGATTCTACACGTGCACACCATAACTCAAGTAAATTAGAGGAGGAAAACACTGGTAAAGGGATTTCAGTAAGAGATGCTTCAATCGAGCTATCTAGGGAGCACATAAAATTTTCAGATGAGCTACCGCAAGCGTTAAAATATAATTGTGGTAGCCCTGGCTTTGATCCTCCACCTTGTGGTGATGAGGCTAACTCTCTTTTGGAATTGCCTGGTGAGGCAGCAACAGATGTTGGCTATGTTCAGGAAGGCTGTAAAACTGACTCGGTAGAGGTTGAAGTGCGTCTTCAGGAAGTATGTCAGATGGAGCCAAAGAGTGAAGGTCCAGACTGTTATTGGGATAGTTTAATTCCTGATGCCCTGGATATGCTAATTTTTAATTCCCCAGGTGATGCAGAAGCTTTTAAGGGTCTAATGCACAAACCCTTGGCCTCTTCTATTCGACTCAATGAATTTATGTCTATGCTACCACATTCTACCATCAATAATGGTAGGAAAATGCACATTGTTGATTCAGATGCTTCTGGTTCTGCACCTGAAATTGAAGATCATTGTTCTGAGCTGATGACAGCCACAGGCACGAACCAAACACAAGATAATTTTGCCAATGTTGCTTTAGTGACTAGCAATTCAAATGAGAAAGCAAACGACCAGCTTGTTTCTGCCACTCACCGTACCATACGGAGGCGCTGTCTAGACTTTGAGATGGCCAATGTGCAAAGGAAGAACTCTGATGAGAATTCAAACACTGGTTCTAGTACATCTGAGTCTGATGAGAGGAATGTTGCTAATGAAAAGCAATTGCTTCCTGCAAAACGCAATGGGGATTTACAGAGGGGAATTTTGCAAGGAATTGGTCTACACTTGAATGCACTTGCTGCCTTAAAAGAATACAAGGGCATACAAATTGAAAAATTGTCTTCTGGAAGACAACTCAGTCTGCCCAGCTCTACTTCTTTGCAAATCTCTACAAGCCAAGAACATCAGAATCTATCATTGGTACCTGTGTCATCTGAAAGAGAATTGGATCCATCAGACAATGGGGTTCAGCCTGCTGAAGATTGTTCCCAGCCATCAGCTTACATGGCTGGTGAAGACTTCAATCAGAACAGCCCCAAAAAGAAAAGGCGTAAGTCGGAGACACCAGGAGAAACCGAGGGCTGTAAACGCTGCAATTGCAAGAAATCAAAGTGTTTGAAGCTTTATTGCGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTATTCATGAAGACACTGTTCTTCAAACTCGCAAGCAGATTGAATCTCGTAACCCTCTTGCATTTGCTCCTAAAGTCATCAGAAATTCTGATTCTGTACCTGAAATTGGGGATGACCCAAATAAAACACCAGCTTCAGCACGACACAAGAGAGGATGCAACTGCAAAAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGGGGTGTTGGTTGCTCCATTAGCTGTAGATGTGAAGGGTGCAAGAATGCTTTCGGTAGAAAGGATGGTTCTGCTTCTGTAGGCATAGAAACTGATCCAGAAGAAACAGAAGCCACTGACAAGGGTGTGACAGAAAAAGCTTTACAGAAAACTGAAATTCAGAATACTGAAGATCATCCCGATTCTGCTACTGTGGCAACACCATTACGGCTTTCCAGACCATTGCTTCCATTGCCTTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCATCTCTGGCTCTGCATTGTTTGCCAGCCAAAAGCTTGGGAAACCAAACCCTCTTTGGTCTCAAGCTAAGCATTTTCAAACTGTTCCAGATGAAGAAATACCGGATATTCTGCAAGGTGATAGCTCTCCTATCACTTGCATCAAAACCTCTTCTCCAAATGGCAAGAGGATCTCCTCACCTAACTGTGACTTGGGATCATCTCCTAGTCGCAGAGGTGGCAGGAGGTTGATATTACAATCCATTCCTTCATTTCCTTCTCTCACCCCTCACCCTTAG 2325 0.4335 MDTPERNQITSTLSKFEDSPVFNYINSLSPIKPVKSVPISQTFNSLSFSSPPSVFTSPHVSCLKESRFLRRHNPLGTSKPKVPSEDVIKVHSSEETLADSTRAHHNSSKLEEENTGKGISVRDASIELSREHIKFSDELPQALKYNCGSPGFDPPPCGDEANSLLELPGEAATDVGYVQEGCKTDSVEVEVRLQEVCQMEPKSEGPDCYWDSLIPDALDMLIFNSPGDAEAFKGLMHKPLASSIRLNEFMSMLPHSTINNGRKMHIVDSDASGSAPEIEDHCSELMTATGTNQTQDNFANVALVTSNSNEKANDQLVSATHRTIRRRCLDFEMANVQRKNSDENSNTGSSTSESDERNVANEKQLLPAKRNGDLQRGILQGIGLHLNALAALKEYKGIQIEKLSSGRQLSLPSSTSLQISTSQEHQNLSLVPVSSERELDPSDNGVQPAEDCSQPSAYMAGEDFNQNSPKKKRRKSETPGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRNSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSASVGIETDPEETEATDKGVTEKALQKTEIQNTEDHPDSATVATPLRLSRPLLPLPFSSKGKPPRSFVTTISGSALFASQKLGKPNPLWSQAKHFQTVPDEEIPDILQGDSSPITCIKTSSPNGKRISSPNCDLGSSPSRRGGRRLILQSIPSFPSLTPHP* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g2020 774 ProSiteProfiles CRC domain profile. 484 609 IPR005172 -
Gso1g2020 774 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 486 521 IPR005172 -
Gso1g2020 774 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 572 607 IPR005172 -
Gso1g2020 774 MobiDBLite consensus disorder prediction 466 485 - -
Gso1g2020 774 MobiDBLite consensus disorder prediction 414 485 - -
Gso1g2020 774 MobiDBLite consensus disorder prediction 335 359 - -
Gso1g2020 774 MobiDBLite consensus disorder prediction 414 433 - -
Gso1g2020 774 MobiDBLite consensus disorder prediction 732 774 - -
Gso1g2020 774 SMART CXC_2 569 610 IPR033467 -
Gso1g2020 774 SMART CXC_2 483 524 IPR033467 -
Gso1g2020 774 MobiDBLite consensus disorder prediction 732 749 - -
Gso1g2020 774 MobiDBLite consensus disorder prediction 338 355 - -
Gso1g2020 774 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 773 - -
Gso1g2020 774 MobiDBLite consensus disorder prediction 96 116 - -
Gso1g2020 774 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 773 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g2020 Gso-Chr1 56653756 56658826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g2020 16 773 CPP Transcription Factor Family AT4G14770 44.046 1.33e-160 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Gso1g2020 TCR 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g2020 - - gmx:100804447 1537.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2020 1 56653756 56658826 Gso11g0059 11 496879 501563 GST