Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g2018 ATGGATTCGGAAGGCGAGGGTGTTAGGACACCAAAGATGGGAGTGGAAGCAGAAGGGGCTCTGAATTCAAAGATGAAAGGTGCTGGAAACGTGAGCAGTAAGGATATGATTTTCAGAGCTGATAAGATTGATCTCAAGAGTTTGGATGCACAGCTGGAAAAGCACTTGAGCAGGGTTTGGTCGAGGAGCATTGAGACTAAACGGCCTAGAGAAGAGTGGGAGATTGATTTGGCCAAATTGGATCTGCGATATGTTGTGGCTCATGGGGCATATGGTACTGTATACAGGGGTACATATGATACCCAAGACGTTGCAGTGAAAGTGTTGGACTGGGGTGAGGATGGTGTAGCTACTGCTGCTGAAACTGCTGCTTTGCGGGCATCTTTTAGGCAGGAGGTTGCTGTCTGGCAAAAACTTGACCATCCAAATGTGACAAAATTTGTTGGAGCTTCAATGGGTACTTCAAATCTTAAGATTCCGCCAAAAAACCCTATGAATGCCGACGAAGAGTCCCTTCCTTCTAGGGCATGCTGTGTTATTGTTGAGTTTGTCTCTGGTGGGACACTAAAGCAATATTTGTTTAAAAGTAGGAGGAGGAAACTTGCTTATAAGATTGTGATTCAGCTGGCTTTGGACCTTGCTAGGGGTCTTAATTATCTACATTCAAAGAAGATTGTTCACCGAGACGTTAAGACAGAGAATATGTTACTAGATACTAGTCGGAATCTAAAAATAGCTGATTTTGGAGTTGCTCGGGTTGAAGCTATGAATCCAAGTGACATGACTGGTGAAACTGGAACCCTAGGATATATGGCTCCAGAGGTTCTGGATGGAAAACCTTACAACAGGAGATGTGATGTCTATAGCTTTGGCATTTGCTTGTGGGAAATTTATTGCTGTGATATGCCTTATCCAGATCTAAGCTTTGCTGACGTGTCATCTGCAGTTGTTCGCCAGAATTTACGACCAGATATTCCGAGATGTTGTCCAAGCGCCTTGGCAAATATCATGCGGAAATGCTGGGATGCAAATCCAAACAAGCGTCCAGAAATGGAAGAGGTGGTGAGGATGCTGGAAGCACTTGATACTAGCAAAGGTGGTGGTATGATACCTGAAGATCAGAGTTCAGGTTGCTTTTGTTTTGCCCCAACCCGTGGTCCCTAA 1164 0.4459 MDSEGEGVRTPKMGVEAEGALNSKMKGAGNVSSKDMIFRADKIDLKSLDAQLEKHLSRVWSRSIETKRPREEWEIDLAKLDLRYVVAHGAYGTVYRGTYDTQDVAVKVLDWGEDGVATAAETAALRASFRQEVAVWQKLDHPNVTKFVGASMGTSNLKIPPKNPMNADEESLPSRACCVIVEFVSGGTLKQYLFKSRRRKLAYKIVIQLALDLARGLNYLHSKKIVHRDVKTENMLLDTSRNLKIADFGVARVEAMNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPDIPRCCPSALANIMRKCWDANPNKRPEMEEVVRMLEALDTSKGGGMIPEDQSSGCFCFAPTRGP* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g2018 387 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 8 381 - -
Gso1g2018 387 CDD STKc_MAP3K-like 86 358 - -
Gso1g2018 387 Gene3D Phosphorylase Kinase; domain 1 69 160 - -
Gso1g2018 387 PRINTS Tyrosine kinase catalytic domain signature 181 194 IPR001245 GO:0004672|GO:0006468
Gso1g2018 387 PRINTS Tyrosine kinase catalytic domain signature 219 237 IPR001245 GO:0004672|GO:0006468
Gso1g2018 387 PRINTS Tyrosine kinase catalytic domain signature 285 307 IPR001245 GO:0004672|GO:0006468
Gso1g2018 387 PRINTS Tyrosine kinase catalytic domain signature 329 351 IPR001245 GO:0004672|GO:0006468
Gso1g2018 387 SMART serkin_6 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g2018 387 Pfam Protein tyrosine and serine/threonine kinase 83 358 IPR001245 GO:0004672|GO:0006468
Gso1g2018 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Gso1g2018 387 ProSiteProfiles Protein kinase domain profile. 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g2018 387 SUPERFAMILY Protein kinase-like (PK-like) 59 358 IPR011009 -
Gso1g2018 387 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 8 381 - -
Gso1g2018 387 Gene3D Transferase(Phosphotransferase) domain 1 186 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g2018 Gso-Chr1 56638282 56642262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g2018 22 387 MAP Kinase Kinase Kinase AT3G22750 80.163 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso1g2018 PK_Tyr_Ser-Thr 7.1e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g2018 - - gmx:100803917 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2018 1 56638282 56642262 Gso11g0060 11 512345 515965 GST
Gso20g1191 20 41804259 41809261 Gso1g2018 1 56638282 56642262 PCT