Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g2011 ATGAGTACTGCCGGATGGTCAGATGAGGAATGCTCTGTCATCGGAGAAAAGGCAGAAATTGGGTTTCTAGATTTTGAGGAAGAGAAGTCTGTTTGCAGTTACATTGATAATGAAGGGGCACCGATTATTGTATCTGTCCCATTTGCATTTGTGGATGGCAAGCCTCAATCTGTATCTGTAGGAGATACTGCTGTGGATTTAATAACCATTAGGAATACTACTGATGAACCCGTGGACCTGTGGAGTGTTCATATTTTTGCCTCTAATCCTCAGGACACCTTCACTCTTTCTCTCACAGAACCTCCGTCAGCAAATTCAAATGCAGACGAAGATCAGAGCTGTTTAGAATCTTTCACTTTGGAGGACAGGGTGCTTCAGCCTGGTGAGAACTTAAAAATATGGTTGTCTTGCAAGACAAAAGAAATGGGGATGTATTCGTCAGTTGTGTATTTTGATGTTGGAGATGAAAAAATCGAAAGGGTGGTTTTCCTCTTAGTTGAAGACAAAATCTCCAAGTCTTTGGCTTCTAACAGGCCTTATTCAAGAAGAAAGAAAAAAGACAAATTTGTTGTAGATACTTTTGTTGCAGGTTCACGTCCTGCAGGGAAGCCAACTCGAAGATACATTAATAGGCTTCCAAAATACGACATTCCCAGGGACATTAGACAGTTGCTTGAGAGCAATCGGGTCCCTCAAGTTGTAGAAGAAGGTCTTACAAAAAGGACTTATGCTTCTTTTTTCAAAACATTAATAATCATGGAAGAGATACAATTGGAGGAAGACATGAGGACTTATGACATGGAATGCATATCTATGAGAAAGAGGGCCAATCAATTCGTGACTTTGGAGGTTCCCGGGCTAGCTGAGAGAAGACCCTCGCTGGTTCATGGGGATTTTATCTTTGTCAAGCTCACATCTGAACGTGATAATAACACCACACCCGTTTACCAGGGATATATCCACCGAGTTGAAGCTGATGAGATCTATTTGAAGTTTGATCCTGGATTTCACTTTTACCACAGGGATGAAAATCGCTATGATGTTCACTTCACATATAACAGGATCAATATGAGAAGGTTATATCAAGCAGCTGAGGCTGCAGAAAAGTTGGTAACTGATTTTCTTTTTCCATCTACATCCAGAAAGAGACACATTAAAACCACTTCTCTGCTTCCCATATCTGGTACTTTTAACGAGGAGCAAATTAGTTCAATCAAAATGATTCTTGGTTGCAAAGGTGCACCACCCTATATGATTCATGGGCCCCCAGGTACGGGAAAGACAAGGACAATGGTAGAAGCAATTCTCCAGCTCTACAAATATCACAAGAATGCTCGTATTCTTGTCTGTGCACCCTCAAATAGTGCAGCAGACTACATACTAGAGAAACTACTTGCTCAACAGGATGTTGAATTTCGAGAGAATGAAATATTCAGGCTCAATGCATCTGCCAGGCCATACGAGGATGTCAAACCTGAATTTGTCCGCTTCTGCTTCTTTGATGAAATGGTATTTAAGTGTCCCCCAGTCAATGCCCTCATTCATTATAGGATCATAATATCCACATATATGAGTGCCTCTCTTCTTTATGCTGAAGATGTTTCCCATGGTCACTTCTCTCACATTTTTTTGGATGAGGCTGGCCAAGCTTCTGAACCTGAAACCATGATCCCTGTATCCCACCTCTGCACAAGCGATACTGTTGTTGTTCTGGCTGGAGACCAATTGCAGTTGGGTCCAGTAATATATTCCAAGAAAGCAGATGAGTATGGGTTGGGGGTTTCATACATGGAACGGTTGTGTGAATGCGAATTATATGCCAGTGGAGATACAAATTATGTAACACGACTGATTAGGAACTATCGATGTCACCCAGTGATTTTACATCTCCCTTCAAAGCTGTTCTATTGTGGGGAACTGATTGCCTGTAGAGACTCCAAATCTTTCATGGTGATTGGGGATTTGCTACCTAATAAGGATTTCCCTATTATTTTCTATGGCATCCAAGGATGTGATGAAAGAGAAGGGAATAACCCATCATGGTTCAATCGAATTGAAGCAAGTAAGGTTATAGAAGTTGTCAGGAGACTGATAGCCGGTGGGAATATAAAGGAGGAAAACATTGGCATAATAACTCCATATAGGCAACAAGTGCTGAAAATAAAACAGACACTTGAAAATCTAGATATGCCTGAAATCAAAGTGGGCAGTGTCGAACAATTTCAAGGACAAGAGAAGGAGGTTATTATCATATCTACAGTTCGATCAACTATCAAACACAATGAGTTTGACAGAGTCCACTGTCTTGGCTTTTTGAGCAATTATAGAAGGTTTAATGTGGCTATAACCCGTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAGGACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTATCAGGGTTGTTCTCTTCCTGAAAGGGTGGAACTTTATGAAGATGAGGACACTGGAGAGAACACTTGCTTTACTGAAGATAATGCATCGCCCTCAAACAATGTAGAATGGGGTCAAGATTCATCAAATAATGGAGAATGGGGTCAAGATTCATCCTTCACTAAACCTGTTACAGATGAAGCTGAATGGTCTGATGGCTGGAGAAGTAATTAA 2661 0.4104 MSTAGWSDEECSVIGEKAEIGFLDFEEEKSVCSYIDNEGAPIIVSVPFAFVDGKPQSVSVGDTAVDLITIRNTTDEPVDLWSVHIFASNPQDTFTLSLTEPPSANSNADEDQSCLESFTLEDRVLQPGENLKIWLSCKTKEMGMYSSVVYFDVGDEKIERVVFLLVEDKISKSLASNRPYSRRKKKDKFVVDTFVAGSRPAGKPTRRYINRLPKYDIPRDIRQLLESNRVPQVVEEGLTKRTYASFFKTLIIMEEIQLEEDMRTYDMECISMRKRANQFVTLEVPGLAERRPSLVHGDFIFVKLTSERDNNTTPVYQGYIHRVEADEIYLKFDPGFHFYHRDENRYDVHFTYNRINMRRLYQAAEAAEKLVTDFLFPSTSRKRHIKTTSLLPISGTFNEEQISSIKMILGCKGAPPYMIHGPPGTGKTRTMVEAILQLYKYHKNARILVCAPSNSAADYILEKLLAQQDVEFRENEIFRLNASARPYEDVKPEFVRFCFFDEMVFKCPPVNALIHYRIIISTYMSASLLYAEDVSHGHFSHIFLDEAGQASEPETMIPVSHLCTSDTVVVLAGDQLQLGPVIYSKKADEYGLGVSYMERLCECELYASGDTNYVTRLIRNYRCHPVILHLPSKLFYCGELIACRDSKSFMVIGDLLPNKDFPIIFYGIQGCDEREGNNPSWFNRIEASKVIEVVRRLIAGGNIKEENIGIITPYRQQVLKIKQTLENLDMPEIKVGSVEQFQGQEKEVIIISTVRSTIKHNEFDRVHCLGFLSNYRRFNVAITRAISLLVIIGNPHIICKDDHWSQMLWHCVDNSSYQGCSLPERVELYEDEDTGENTCFTEDNASPSNNVEWGQDSSNNGEWGQDSSFTKPVTDEAEWSDGWRSN* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g2011 886 MobiDBLite consensus disorder prediction 839 874 - -
Gso1g2011 886 Pfam AAA domain 516 585 IPR041677 GO:0004386
Gso1g2011 886 Pfam AAA domain 397 494 IPR041677 GO:0004386
Gso1g2011 886 Pfam AAA domain 593 795 IPR041679 -
Gso1g2011 886 PANTHER RNA HELICASE SDE3-RELATED 4 853 - -
Gso1g2011 886 Gene3D - 327 608 IPR027417 -
Gso1g2011 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 806 IPR027417 -
Gso1g2011 886 CDD DEXXQc_Helz-like 398 622 - -
Gso1g2011 886 Gene3D - 622 822 IPR027417 -
Gso1g2011 886 PANTHER DNA2/NAM7 HELICASE FAMILY 4 853 IPR045055 -
Gso1g2011 886 MobiDBLite consensus disorder prediction 836 886 - -
Gso1g2011 886 CDD SF1_C_Upf1 623 811 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g2011 Gso-Chr1 56591308 56597934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g2011 343 553 Core DNA Replication Machinery Family AT1G08840 26.147 8.29e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g2011 K18422 - gmx:100801796 1788.08