Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g2003 ATGAATAAGAGTGGGGGAGGAGAGATGAGTAAGTGGCCGTTCACAATGTCTCAGTGGCAGGAACTGGAACATCAAGCTTTGATTTACAAATACATGGTGGCTGGTCTTCCTGTCCCTCCTGATCTAGTCCTTCCCATTCAGAACAGCTTCCACTCCATTTCCCAAACCTTCTTGCACCATCCCTCTACCACCATGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCGGAGCCAGGACGATGCAGGAGGACTGATGGGAAAAAGTGGAGGTGCTCCAAGGAAGCCTACCCAGACTCCAAGTACTGTGAGCGACACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACTCAGTCATCATCTAATGTGTCATCATTGACTGTAACTGCTGGCAGCAGCAGCAGTGCAACTGGAAATTTCCATAACCTTACCACCACAAATGCATATGGTAATCCCCAAGGGACTGGTTCTGGATCAGACCAAACCCACTATCACATGGATTCCATTCCCTATGGGATCCCAAGTAAAGAATACAGGTATTTTCAAGGACCTAAATCTGAGGGAGGTGAACATAGTTTCTTGTCCAAAACTTTAGGAAGCAACAAGGTTCTTCACATGGAGTCACAGATGGATAACACTTTGATGCCAACCAGTGGAGTTGCCTCATTCTCTACATTGAGATCAAATAATAATTCCATGTTGCAGGGTGATTATCTGCAGCCTTCTTTCTTATCTAGTGAGTATGCCTCAGCAGAAACTGTGAAGCAAGAGGGTCAGTTCCTTCGACCTTTCTTTGATGAATGGCCTAAAAGGAGGGACTCATGGTCTGGTCTGGAAGATGAGGGATCCAACCACACTCAACTCTCAATATCCATTCCTATGTCAGCATCAAATTTCTCTACAACTAGCTCTCATTCCCCACATGGTGAGATTTAA 957 0.4587 MNKSGGGEMSKWPFTMSQWQELEHQALIYKYMVAGLPVPPDLVLPIQNSFHSISQTFLHHPSTTMSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTQSSSNVSSLTVTAGSSSSATGNFHNLTTTNAYGNPQGTGSGSDQTHYHMDSIPYGIPSKEYRYFQGPKSEGGEHSFLSKTLGSNKVLHMESQMDNTLMPTSGVASFSTLRSNNNSMLQGDYLQPSFLSSEYASAETVKQEGQFLRPFFDEWPKRRDSWSGLEDEGSNHTQLSISIPMSASNFSTTSSHSPHGEI* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g2003 318 PANTHER GROWTH-REGULATING FACTOR 5 10 310 - -
Gso1g2003 318 Pfam WRC 77 119 IPR014977 -
Gso1g2003 318 PANTHER - 10 310 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gso1g2003 318 MobiDBLite consensus disorder prediction 117 171 - -
Gso1g2003 318 Pfam QLQ 13 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso1g2003 318 MobiDBLite consensus disorder prediction 105 175 - -
Gso1g2003 318 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso1g2003 318 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso1g2003 318 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g2003 Gso-Chr1 56545034 56550610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g2003 1 119 GRF Transcription Factor Family AT3G13960 58.678 5.03e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gso1g2003 WRC 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g2003 - - gmx:100797906 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2003 1 56545034 56550610 Gso11g0073 11 591874 595709 GST