Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g2002 ATGATTCAGAACATTGATATGAGACTTGAATCGGGAACCTGCAATGTGTGCTCAGCTCCTTGTTCATCTTGCATGCATCTTAACCATGCTCTCATGGGGTTAAAGGCTGAAGAGTTTTCTGATGAAAACTGTCGCATAGGAGAGGCTAATTCTATGGATGAGGATAATGAATATTCTCTTAGGAGCAGAGCTTGTGAAAGCTCACAGCACACTGTCAGTGAAGCAAGTAATATGCAGAGTGTGAATTCAAGTCATGACGCACTGTCTGAAAATGCTGACAGTAGACAGATCATACTGAATAAGTATCAGGATTCCAAGCATTTAGAAGGTCTTGATGACAACACTTCTTGTATTAGTAGAGCCAGTGATGCTAATTTAGTGAACGATAGCCATCAAAGGAATGAAGAGAGAATAATAATGAATGTGGAAAGGGATTCATTTTCTCATGTCCCAGAAAAGTTGTCAGAATGCTCCATTGAGAATTCTAGTTCATCATTGACCAAAGAGAGGGAACCTGTTGTTTCTGGCGAGAAATATATTGCTGTTATTGAGAGTACTTCTAAGATTTCACTAAAAGTATGTCCTAAGTCAGAAGCAGATACTGATGTCTGTGATGCTAACAATGAAGATCCTAAATATGCAGTTCAAGACGGACAGTGTGAGAAAGCTCAAGAGCTGGTTAAATCCCCTGGCAAGCAGGAACCTCAATCTGATGACGAGAGTGATGAATCAGATGTTGTGGAACATGATGTAAAGGTGTGTGACATCTGTGGAGATGCTGGTCGTGAGGATCTACTTGCCATATGTAGTAGGTGCAGTGATGGTGCAGAGCACACCTACTGCATGCGAGAAATGCTTGAGAAAGTCCCTGAAGGGGATTGGTTATGTGAAGAATGCAAAGATGCAGAGGAGAATGAAAATAAAAGACTGGATGTTGACGACAAAAAAATGGTTGAAGTTAGTTCAACCTCACAAGTTTCTGGCAAAAGACTCTCTGATAACATTGAAGTAGCTCCAGCAGCAAAAAGACAAGCTCTTGAATCAAGTATAGGATCACCAAAGACGTCAAGTCCCAAGAGATTAGTTCCACTGTCCCGAGAATCTTCATTTAAGAGCTTAGATAAATCAAAAGTGAAGCCTGGTCTTCTGATGCCTATTCGAAACCACTCTGGTGGTATTGATACAGAGATTGCTCGCTCTCCTTCCATTGGTCCCCGGGGTCAAAATCCAAAAGGTATGCTGTTGAAGTCTAATTCATTCAACAACTTAAATTCCAAGCCAAGAGTCAAACTTGTTGATGAAGTTGTTCCCCCCCCCAAAAAAGGGGGTAATGAACATACTTCTAAGAACATGGAGATGCCTGCTCGGGTGACTGGAAAATCTACATTATTCAAATCCTCAAGTTTGGGGCGATCAAATGCAACTGAATCAAAAGTGAAAATGCTTTCGCCAAAGTCTGCAACTACTCAGGATTTGAAAGGATCTAGACATCTAAAAGAATCAGGTGCATTTGACAGGAAATTTCCATCTAGGATTGATCGTCCTGTGGCTAGTTTGGTTGTTTCCACTCCTAAGGGTGATCAAAAGCTTACACCTCATGCGGAAAGCAGTAAAGCTTCAGCAATGAACAACAATCGAGAGTTGAAGGTTAACCAGGATGGAAAATCATGTGCATTACCAAGGTCAATGAGTAATATAAGCCGGAAAAGTTTGGAGCCTCAAGTTAGTTCAGAGAGAACATCAACCCGTGTTGATGAAACTCAACAGGATGTGCTGTCTCAATCACGGGAGACAGCAAATCAGGTTGAGAGAAGCAGAGATAGTTCTAGTGATCGTGGAAGGCCAGCTGTTCCTACTTCAAAAAACCCATTATGTCAAAAATGTAAGGAATTTGGCCATGCTTTGGAATGTTGTACAGCTGGTTCTACACAGGAATCTGGTGCTGAAATATCTGTCACTGCCTCGAGTAGTTCAAAAGAGGAGATGCATAAAGACAATATATTGAAAGTTGCAATCCAGGCTGCTTTACTCAGAAGGCCTGAAATTTACAAGAAGAAAGAAATATCTTATCAAACTGACGAGGTTTCTACCTCAGGCACAGAGTTGAATTGCGAAGTGACTTCAAAAGACCAAGTTTTGGTTTCCAGCACACTGAAGAATAGCATATCTGCTGATGAAACCCAAGAACAACAAGAAATCCTTGAGAATTCTACCTCAGATTCTTCCAAATGTTCATCTGCCAATGATTTGAAGCAACTTAACTCTTGTCCAACTGACTTTCGGTCCAAACCAGGAAAGTCAGATTCCATTGGTCTTGCAGCTGGAAAGCCTGTAGTGAGAGACTTGTCTGATAAAGCTGTGACAATGTCCAGTGTTCCTTTGAAGATGTTGGCCTTTCCTGAATATGAATACACCTGGCAGGGTGTCTTTGAAGTGCATAGAAATGGAAAGCCTCCTGATTTATATACTGGATTTCAGGCACATCTATCCTCTTGTGCTTCTCCTAAGGTTCTTGGGGTAGTGAACAAGTTTCTACCCAAAGTTTCCCTCAGTGAAGTTTCTCGCTTGAGCATGTGGCCTTCACAATTTCTTCATGGTGGTGTTAGTGATGATAATATTGCTCTTTACTTCTTTGCCAGGGATGTTGAAAGTTATGAGAGACACTACAAGGGTCTATTGGATCACATGATTAGAAATGATTTAGCACTTAAAGGAAATTTTGATGGTGTCCAACTGCTGATATTCCCTTCCAACCAGCTTCCTGAAAATTCGCAGCGCTGGAATATGTTGTTTTTCTTATGGGGCGTATTTAGGGGGAGGAGGATCAATCATTCAGATTCTGCAAAAAAGATTTGTATTTCCAGTTTGAATGTAATGCCAGTTGAGGAGAAATCCTCAACTGCCATTTTAACTATGCCTGAAACACATTGTTTGCCAAAGTGCAAGGATGAAGAATCAAATGATTGTGATAAAGTATGCAATGCATTTCTCCCATCCACTTCCAGAGACCAACATCAGACTAGTGGAAGTAGGAATGTTGATGTCAATGACCAGACACATTTGGGTTCACAAGTAAACTTAGAGAAGCTAGATAGTAGGATTGACTCAAAATCTACATCAAGGGTTCCAACAAGCAGTACTCTATTATGTCAAGAAATGAACTCCACTGTTTCATCCCTGAAAGTTAGTGTCCTTGAACAAGAACAGTGCAGAGAGTCTAAACCTCCTGAAGCAATGGGAAGAAGTGCAAGTACTAGGATTGTGGAAACAAAAACTGATTCTGATATTTCTGTCAAGCAAGAGAACACTTTGTCTTTGATTCCTTCTCAAAAAGGTGCTGCAAGCAATATTGGTAAAGATACAATTTCAGAGAAAATAAACAGTGATGAAGACCAGCAGAGGCCTAAGAAGAAACTAGAAGAGGATTGTCCCTATATTGATTTGGAGGCAAATATTGATGATCAAGAAACAGTTGCTGCAAGCAATTTTAGTAAGGATAAAAATTCAGGAACAATTATTGTTGATGAAGATCAGCAAAGGCCCAAGAGGAAACAGAAAGATAATCATTATATTGACTTGGAGGCAACACTTGAAGATCAAGAAACAGGTGCTGTAAGCAATATATATGAGGATAAAATTTCAAGAAAAATGGACGTTGAGGAAGATTGGCGATGGCTTAAGAGGAAACAGAAAGATGATCACTATATTGACTTGGAGGCAACTTTTCATGAAGACCCAAGTGTAGAAGGGATCAACTGTGGGCTACCTAATGATAAAGTTCAGCATGTAGATCTTTCTGACACAATTATGCAGGGTTCTGCTGTCAGTTGTCAGAAAATACCTTGGAATGAGGGAAATGCCAAGTTAGAAGACAGAGAAAGTTCTGGCAAGAAGTTAAAGACAGGTTTCGGTGGGATTTATGGTTCTGGAGGTAGAGACTCTTTTAATGACAGTTTTACATCTCTTGGAAATAATCTTGGCTCCTGTTCTTCAGTTGAGGACAAAGGATGTGAGGAAGCTTGTGATGAGAAAATCATCCGGGAGGACTTGGGAACCCTGGAAAGAACCTTCTTTCCAGTTGGCACACAGAATATTACCAACTCGCTATCAGTGATGGATAGCATGTCAACCAAAGGGGTTGGTGAGTATGATGAAGGATTTCAAGATGGGATTCCCAATCTAGAGCTTGCCTTAGGGGGCAAAACAAAACCACCACCAGCTGCGCCTAAGGGTATGCTGCCTTTCTTAGTTGGGGCAGTAGACAGGCAAAATAACCGCTCTGATAACTTGGGAGACAGGCAGGAGGATGAAGGTGTCGCTGCATCTCTTTCCCTCTCTCTGTCCTTTCCATCTCCAATTAAGGAACAAACAAAAGCTGCAGAGCTTTTGCCTGATGGGCAGCGTGTGAACAACTCGTTTTTCCTTTTTGGGAGAAAATAA 4440 0.4101 MIQNIDMRLESGTCNVCSAPCSSCMHLNHALMGLKAEEFSDENCRIGEANSMDEDNEYSLRSRACESSQHTVSEASNMQSVNSSHDALSENADSRQIILNKYQDSKHLEGLDDNTSCISRASDANLVNDSHQRNEERIIMNVERDSFSHVPEKLSECSIENSSSSLTKEREPVVSGEKYIAVIESTSKISLKVCPKSEADTDVCDANNEDPKYAVQDGQCEKAQELVKSPGKQEPQSDDESDESDVVEHDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMREMLEKVPEGDWLCEECKDAEENENKRLDVDDKKMVEVSSTSQVSGKRLSDNIEVAPAAKRQALESSIGSPKTSSPKRLVPLSRESSFKSLDKSKVKPGLLMPIRNHSGGIDTEIARSPSIGPRGQNPKGMLLKSNSFNNLNSKPRVKLVDEVVPPPKKGGNEHTSKNMEMPARVTGKSTLFKSSSLGRSNATESKVKMLSPKSATTQDLKGSRHLKESGAFDRKFPSRIDRPVASLVVSTPKGDQKLTPHAESSKASAMNNNRELKVNQDGKSCALPRSMSNISRKSLEPQVSSERTSTRVDETQQDVLSQSRETANQVERSRDSSSDRGRPAVPTSKNPLCQKCKEFGHALECCTAGSTQESGAEISVTASSSSKEEMHKDNILKVAIQAALLRRPEIYKKKEISYQTDEVSTSGTELNCEVTSKDQVLVSSTLKNSISADETQEQQEILENSTSDSSKCSSANDLKQLNSCPTDFRSKPGKSDSIGLAAGKPVVRDLSDKAVTMSSVPLKMLAFPEYEYTWQGVFEVHRNGKPPDLYTGFQAHLSSCASPKVLGVVNKFLPKVSLSEVSRLSMWPSQFLHGGVSDDNIALYFFARDVESYERHYKGLLDHMIRNDLALKGNFDGVQLLIFPSNQLPENSQRWNMLFFLWGVFRGRRINHSDSAKKICISSLNVMPVEEKSSTAILTMPETHCLPKCKDEESNDCDKVCNAFLPSTSRDQHQTSGSRNVDVNDQTHLGSQVNLEKLDSRIDSKSTSRVPTSSTLLCQEMNSTVSSLKVSVLEQEQCRESKPPEAMGRSASTRIVETKTDSDISVKQENTLSLIPSQKGAASNIGKDTISEKINSDEDQQRPKKKLEEDCPYIDLEANIDDQETVAASNFSKDKNSGTIIVDEDQQRPKRKQKDNHYIDLEATLEDQETGAVSNIYEDKISRKMDVEEDWRWLKRKQKDDHYIDLEATFHEDPSVEGINCGLPNDKVQHVDLSDTIMQGSAVSCQKIPWNEGNAKLEDRESSGKKLKTGFGGIYGSGGRDSFNDSFTSLGNNLGSCSSVEDKGCEEACDEKIIREDLGTLERTFFPVGTQNITNSLSVMDSMSTKGVGEYDEGFQDGIPNLELALGGKTKPPPAAPKGMLPFLVGAVDRQNNRSDNLGDRQEDEGVAASLSLSLSFPSPIKEQTKAAELLPDGQRVNNSFFLFGRK* 1480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g2002 1479 MobiDBLite consensus disorder prediction 224 247 - -
Gso1g2002 1479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 326 IPR013083 -
Gso1g2002 1479 MobiDBLite consensus disorder prediction 344 623 - -
Gso1g2002 1479 MobiDBLite consensus disorder prediction 1110 1138 - -
Gso1g2002 1479 PANTHER - 7 1473 - -
Gso1g2002 1479 MobiDBLite consensus disorder prediction 1123 1138 - -
Gso1g2002 1479 MobiDBLite consensus disorder prediction 492 512 - -
Gso1g2002 1479 MobiDBLite consensus disorder prediction 529 599 - -
Gso1g2002 1479 MobiDBLite consensus disorder prediction 348 363 - -
Gso1g2002 1479 SUPERFAMILY FYVE/PHD zinc finger 240 302 IPR011011 -
Gso1g2002 1479 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 7 1473 - -
Gso1g2002 1479 MobiDBLite consensus disorder prediction 460 491 - -
Gso1g2002 1479 SMART PHD_3 253 300 IPR001965 -
Gso1g2002 1479 ProSiteProfiles Zinc finger PHD-type profile. 251 302 IPR019787 -
Gso1g2002 1479 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g2002 Gso-Chr1 56528117 56537143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g2002 250 311 C2H2 Transcription Factor Family AT3G01460 33.871 9.64e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g2002 - - gmx:100806639 2662.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2002 1 56528117 56537143 Gso11g0074 11 605893 614673 GST