Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1995 ATGATGAGAACACCAATTGCAAGCAATGATGAAAGTGGTTTGAAGAAGGGGCCTTGGAGCCCAGAAGAGGACAAAATATTAGTGGATTTCATTGAGAAACATGGCCATGGAAGTTGGAGAGCCCTTCCAAGGCTTGCAGGCTTAAACAGGTGTGGAAAGAGTTGCAGACTAAGGTGGACTAATTACCTCAGGCCTGATATCAAACGCGGAAAATTCTCTGACGAAGAAGAGCAACTCATCATCAATTTACATTCAGCTCTCGGGAATAAGTGGGCGGCTATAGCATCTCATCTACCAGGGAGGACTGATAATGAAATAAAGAATTTGTGGAACACCCATTTAAAGAAAAAGCTAATGCAAATGGGGTTAGACCCAGTGACTCACCGTCCAAGAACTGATAACCTAAACCTTCTTAGCAATCTACAACAGATATTGGCAGCTGCTAAAATTGTGAGCAGTTTGACGAACCCATCTGCTCTAAGCTGGCTACAGTCAGATGCCACACTCCAATTATTGCAAAACATGTATGCTAGGCCTACTGCCTCTAACTCAGACCCACTGATCAATCCTTTTCGAACATTAAACTCACTGCCAGATTCTTATTCTTTGCTAAATGATCTTTTGGGTTTCAATCTTCACTCTAATCTCCAAAACCTTTATGATGGTAATTCGCTTTCTCAAATCCAGCCCAATTTCCAAAACTTTGAGGCCCCTCAGCAGCCAACGCAGCACTTGAATGGTGGCAGAAATACTAGTTTCAGGGAATCGCAAAAGCAATTTGGTTCCACAAATAATATTGCTGACCCTTCACTATCGAGTTCGCTTCCAAATCTGGTTTCTGCCTCACCTGAACGTTCCCCATTCAAGGAAGCTGAAAACATTATGGTAAACTCAAAGGACTGTTCCACCTCCTTTGAGTTAACGTGGGGTGATTTCATGGATGAAGAAACAACCGAAACTTATTGGAAAGGTTTCATAGATCGACCAACATTCTAA 996 0.4237 MMRTPIASNDESGLKKGPWSPEEDKILVDFIEKHGHGSWRALPRLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHSALGNKWAAIASHLPGRTDNEIKNLWNTHLKKKLMQMGLDPVTHRPRTDNLNLLSNLQQILAAAKIVSSLTNPSALSWLQSDATLQLLQNMYARPTASNSDPLINPFRTLNSLPDSYSLLNDLLGFNLHSNLQNLYDGNSLSQIQPNFQNFEAPQQPTQHLNGGRNTSFRESQKQFGSTNNIADPSLSSSLPNLVSASPERSPFKEAENIMVNSKDCSTSFELTWGDFMDEETTETYWKGFIDRPTF* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1995 331 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Gso1g1995 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Gso1g1995 331 MobiDBLite consensus disorder prediction 260 283 - -
Gso1g1995 331 MobiDBLite consensus disorder prediction 1 20 - -
Gso1g1995 331 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Gso1g1995 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Gso1g1995 331 PANTHER MYB TRANSCRIPTION FACTOR 2 329 - -
Gso1g1995 331 CDD SANT 71 114 IPR001005 -
Gso1g1995 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 329 - -
Gso1g1995 331 CDD SANT 18 63 IPR001005 -
Gso1g1995 331 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Gso1g1995 331 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Gso1g1995 331 Gene3D - 15 68 - -
Gso1g1995 331 MobiDBLite consensus disorder prediction 260 281 - -
Gso1g1995 331 SMART sant 68 116 IPR001005 -
Gso1g1995 331 SMART sant 15 65 IPR001005 -
Gso1g1995 331 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Gso1g1995 331 Gene3D - 71 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1995 Gso-Chr1 56469936 56472240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1995 1 327 MYB Transcription Factor Family AT5G16770 45.763 2.18e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso1g1995 Myb_DNA-binding 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1995 K09422 - gmx:102660452 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1995 1 56469936 56472240 Gso11g0082 11 664157 666060 GST