Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1991 ATGGAGGGAGCATCGTGGAATAGTAGTGTTTGTGTGGCACCGTTTCTGAGCAAGACCTACGACATGGTTGATGATCCTTCCACCGACTTAGTGGTGTCGTGGGGCGAAAACAACAACTCCTTTGTTGTTTGGAACGTTCCCCAATTCGCCACAGACATCTTGCCCAATCATTTTAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTGAATACTTATGGTTTTAGAAAGGTTGACCCAGATCGATGGGAATTTGCAAATGAAGGATTTTTAAGAGGTGAAAAACAACTTTTAAAAAGTATCAGTAGGCGGAAATCTGCTCATGTAAATGGTAGTCAACAAGCATCTCAAGTGCATAAATCAGCTGCTGGAGCATGTGTTGAAGTGGGGAAATTTGGGCTTGAGGAAGAGGTGGAAAGACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTTGTTAGGTTGAGACAGAAACAGCAAGGGACTGATAACCAATTGCAAAATGTTGGGCAACGTGTGCAGTCAATGGAGCAGCGTCAGCAGCAAATGATGTCATTCCTGGCTAAGGCCATGCAGAGCCCAGGCTTCTTAGCTCAATTTGTTCAGCAGCAGAATGAAAGTAGTAAACATATCCCTGGGAGCAATAAAAAGAGGAGGCTCCAGCGACAAGAAGAAGATAGTTTAGCCACCAAGGATCTCCATAGTTCTCTTGATGGACACATTGTCAAGTACCAGAGTTCCATAAATGAGGCTGCAAAAGCATTATTTCGCCAGATATTGCAAATAAACAATTCTACAACACAATCATCAATTAAGAACCCTGATGTTTTCCTTATTGATGATATTCCTTCTGCCATTGCATCAGATAGCAGTAGTTCATCCACTCAGGTTTCTAATGTGATGGTTCCACCTATATCTGAGCTGACGTCTATGGAAGTAGGATCACAGTTTCCTCTCAGTTGTATGCCCAGTAACATATCTGAGGTGCAGTCTTCACCTGCTGTTTTGGGTTTCTGTAGAAGTCAGGGGATGGAGACAGAAAGCAGTTTATTGAATCATGAGCTGAATGTTATGGGGGCTGATACTAGGAACATGGGGGAGATAGATATGATGTCAACTGTTTTAGATGAGGCAGACGAAGCTGATCATTTTTCACCTGACACAGATGGAATTTCTAAACTCCCAGAAATCAGTGATGAATTCTGGGAACTGTTTTTAAGGCCAAGCCCACTTACAGAAGACACAGAGGAAACTAAATGTAGCTCTCTAGGATGTGGTTTGACTGAAGATCAGGGTTTGCCTTCAGAAATGGGAAATAAGCAGGAAAATTTTGATACAATACAACATGTTGACTGTCTTACTCAACAGATGGGACTTCATGCATTGGAGTACTGA 1395 0.4237 MEGASWNSSVCVAPFLSKTYDMVDDPSTDLVVSWGENNNSFVVWNVPQFATDILPNHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGEKQLLKSISRRKSAHVNGSQQASQVHKSAAGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQKQQGTDNQLQNVGQRVQSMEQRQQQMMSFLAKAMQSPGFLAQFVQQQNESSKHIPGSNKKRRLQRQEEDSLATKDLHSSLDGHIVKYQSSINEAAKALFRQILQINNSTTQSSIKNPDVFLIDDIPSAIASDSSSSSTQVSNVMVPPISELTSMEVGSQFPLSCMPSNISEVQSSPAVLGFCRSQGMETESSLLNHELNVMGADTRNMGEIDMMSTVLDEADEADHFSPDTDGISKLPEISDEFWELFLRPSPLTEDTEETKCSSLGCGLTEDQGLPSEMGNKQENFDTIQHVDCLTQQMGLHALEY* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1991 464 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1991 464 Coils Coil 131 158 - -
Gso1g1991 464 MobiDBLite consensus disorder prediction 211 232 - -
Gso1g1991 464 MobiDBLite consensus disorder prediction 202 232 - -
Gso1g1991 464 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1991 464 SUPERFAMILY "Winged helix" DNA-binding domain 12 104 IPR036390 -
Gso1g1991 464 Gene3D - 8 105 IPR036388 -
Gso1g1991 464 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1991 464 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1991 464 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1991 464 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 9 440 - -
Gso1g1991 464 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1991 464 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 440 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1991 Gso-Chr1 56435066 56438741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1991 12 463 HSF AT5G16820 51.836 1.48e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso1g1991 HSF_DNA-bind 3.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1991 K09419 - gmx:100793665 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1991 1 56435066 56438741 Gso11g0086 11 702196 705722 GST
Gso1g1991 1 56435066 56438741 Gso20g1203 20 41984841 41987410 PCT
Gso1g1991 1 56435066 56438741 Gso10g2178 10 48817618 48820075 PCT
Gso20g1203 20 41984841 41987410 Gso1g1991 1 56435066 56438741 PCT
Gso10g2178 10 48817618 48820075 Gso1g1991 1 56435066 56438741 PCT