Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1986 ATGATAACTCTAGCTCCTTCTCTTGATACTCCAAAAACTGATCAAAACCAAGTTTCTGATCCCCAAACTAGCCATGTCTTCAAATCAAAATTACCAGATATCCCAATCTCCAACCACCTCCCTCTCCACTCCTACTGCTTCCAGAACCTCTCCCAATTTGCCCACCGCCCTTGCCTCATCGTCGGACCCGCCTCCAAAACCTTCACCTACGCCGACACCCACCTCATTTCCAGCAAGATCGCCGCCGGATTGTCCAACCTCGGAATCCTCAAGGGCGACGTCGTCATGATCCTCCTCCAGAACTCCGCCGATTTCGTCTTCTCCTTCCTCGCCATCTCCATGATTGGCGCCGTCGCCACCACCGCCAACCCGTTCTACACCGCCCCGGAGATCTTCAAGCAGTTCACCGTCTCCAAGGCGAAGTTGATCATAACACAGGCAATGTACGTGGACAAGCTCCGCAACCACGACGGCGCGAAGCTCGGCGAGGACTTCAAGGTCGTAACCGTCGACGATCCGCCGGAGAATTGCCTCCACTTCTCTGTCCTCTCGGAGGCGAACGAGAGCGACGTGCCAGAGGTGGAGATCCACCCGGACGACGCGGTGGCGATGCCGTTCTCCTCCGGCACGACGGGTTTACCTAAAGGAGTGATTCTCACGCACAAGAGTTTAACCACGAGTGTGGCGCAGCAAGTTGACGGAGAGAACCCTAACCTCTACCTCACCACCGAGGACGTGCTCCTCTGCGTGCTTCCGCTCTTTCACATATTCTCGCTCAACAGTGTGCTATTGTGCGCCCTCAGGGCGGGGAGTGCAGTTTTGTTGATGCAGAAGTTCGAGATCGGGACACTGCTGGAGCTGATACAGCGGCACCGAGTGTCGGTGGCGATGGTGGTGCCCCCGCTGGTGTTGGCGTTGGCAAAGAATCCGATGGTGGCGGATTTTGACCTGAGTTCAATACGGTTAGTGCTGTCCGGAGCTGCTCCCTTGGGGAAGGAGCTCGAGGAGGCTCTCCGGAACAGGATGCCTCAAGCTGTTTTGGGACAGGGTTACGGGATGACAGAAGCAGGGCCAGTGCTGTCCATGTGCTTGGGCTTTGCAAAGCAACCTTTCCAAACAAAATCAGGCTCTTGTGGTACCGTAGTCAGAAATGCAGAACTCAAGGTTGTTGACCCTGAAACTGGTCGTTCTCTTGGCTACAATCAACCCGGTGAAATTTGCATCCGAGGGCAACAGATCATGAAAGGATATCTGAACGATGAGGCAGCGACAGCATCGACCATAGATTCAGAGGGTTGGCTTCACACCGGTGATGTTGGCTACGTAGATGATGATGACGAAATTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAGGTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCAGATGCAGCTGTTGTCCCACAAAAGGATGTTGCTGCTGGTGAAGTTCCTGTTGCCTTCGTTGTGAGATCAAACGGCTTTGATCTAACTGAAGAGGCTGTAAAAGAGTTTATAGCTAAACAGGTAGTGTTTTACAAAAGACTGCACAAAGTTTATTTTGTTCATGCTATTCCCAAGTCTCCATCAGGAAAGATATTAAGGAAAGACCTCAGAGCAAAGCTAGAAACCGCCGCCACTCAGACGCCTTAA 1689 0.5252 MITLAPSLDTPKTDQNQVSDPQTSHVFKSKLPDIPISNHLPLHSYCFQNLSQFAHRPCLIVGPASKTFTYADTHLISSKIAAGLSNLGILKGDVVMILLQNSADFVFSFLAISMIGAVATTANPFYTAPEIFKQFTVSKAKLIITQAMYVDKLRNHDGAKLGEDFKVVTVDDPPENCLHFSVLSEANESDVPEVEIHPDDAVAMPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFEIGTLLELIQRHRVSVAMVVPPLVLALAKNPMVADFDLSSIRLVLSGAAPLGKELEEALRNRMPQAVLGQGYGMTEAGPVLSMCLGFAKQPFQTKSGSCGTVVRNAELKVVDPETGRSLGYNQPGEICIRGQQIMKGYLNDEAATASTIDSEGWLHTGDVGYVDDDDEIFIVDRVKELIKYKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDLTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLETAATQTP* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1986 562 ProSitePatterns Putative AMP-binding domain signature. 204 215 IPR020845 -
Gso1g1986 562 SUPERFAMILY Acetyl-CoA synthetase-like 21 556 - -
Gso1g1986 562 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 25 553 - -
Gso1g1986 562 Pfam AMP-binding enzyme C-terminal domain 469 544 IPR025110 -
Gso1g1986 562 PANTHER 4-COUMARATE--COA LIGASE 3 25 553 - -
Gso1g1986 562 Pfam AMP-binding enzyme 50 460 IPR000873 -
Gso1g1986 562 Gene3D - 17 454 IPR042099 -
Gso1g1986 562 MobiDBLite consensus disorder prediction 1 22 - -
Gso1g1986 562 Gene3D - 455 559 IPR045851 -
Gso1g1986 562 CDD 4CL 36 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1986 Gso-Chr1 56385091 56389469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1986 1 467 Monolignol Biosynthesis Gene Families AT1G65060 68.476 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1986 K01904 - gmx:547930 1094.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1986 1 56385091 56389469 Gso11g0774 11 6965154 6968993 GST