Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1985 ATGGCATCTATGAGAGAATTTTCCAGAGTCATACTATCTCACTTAAAAAAACCCCATGCTTCTCCATCTCAACTTCTCTTCCTCCGAACAATGACTTCCAAGGTTTTTGTTAAAGGTCTAGCATTTTCTACGACAGAGGAGGAATTAGCCAAAGCTTTTTCTCAATACGGCAGTGTCCTGAAGGCTAATATAATACTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTGCTAAAGAGGAAGAAGCATGCAAGGCACAGATTGACATGAACGGAAAGATATTACATGGACGAGTTATATATGTAGACGTGCAATTGCCTAACAAGTGA 342 0.386 MASMREFSRVILSHLKKPHASPSQLLFLRTMTSKVFVKGLAFSTTEEELAKAFSQYGSVLKANIILNKAKNRSKGFGYVTFAKEEEACKAQIDMNGKILHGRVIYVDVQLPNK* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1985 113 SMART rrm1_1 34 107 IPR000504 GO:0003723
Gso1g1985 113 PANTHER TRANSFORMER-2-RELATED 20 108 - -
Gso1g1985 113 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 104 IPR000504 GO:0003723
Gso1g1985 113 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Gso1g1985 113 SUPERFAMILY RNA-binding domain, RBD 33 111 IPR035979 GO:0003676
Gso1g1985 113 PANTHER RNA RECOGNITION MOTIF 20 108 - -
Gso1g1985 113 Gene3D - 12 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1985 Gso-Chr1 56378786 56381881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1985 33 108 Eukaryotic Initiation Factors Gene Family AT2G36660 39.474 2.56e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1985 - K13195 gmx:100527061 219.935