Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1982 ATGAGGAGTAGTAGTTCAGCCAAGAAGTTGAAGGGAGTTCGGCGTCGGAAATGGGGAAAGTGGGTGTCGGAGATTCGTGTTCCGGGCACGCAAGGGCGTCTCTGGTTGGGAACCTACGCCACGCAGGAGGCTGCCGCGGTTGCTCACGACGTTGCCGTTTACTGTCTGAGGAGGCCTTCTTCGTTGGACAAACTTAACTTCCCCGAGACCTTGTCTTCGTTCAGCCTTCAGCTCAGGGACATGTCTCCGAGGTCTGTGCAGAAGGTGGCTTCCGATATTGGCATGGACGTTGATGCCAGAAACATTCTTGCTGGTAAAACTTCAACGGTGGTGGCGGAAACTAATTACGAGAGTGATGAGAGGAGTAGAACTGTGTGTGATGTTGATGGAGGTGGTGCTGATGAGCATTCTGATGTGTTTCGGTGGGATGCTGTGGGGAATGAGGATGGAGGGTCTTGGCATGGAAGTGGTGGAGATTGTAAAGAAAGGGATCAGGCCTTGAGCATTTCCATTGAAGATTATCTTGAGCTGTCTTAG 537 0.5177 MRSSSSAKKLKGVRRRKWGKWVSEIRVPGTQGRLWLGTYATQEAAAVAHDVAVYCLRRPSSLDKLNFPETLSSFSLQLRDMSPRSVQKVASDIGMDVDARNILAGKTSTVVAETNYESDERSRTVCDVDGGGADEHSDVFRWDAVGNEDGGSWHGSGGDCKERDQALSISIEDYLELS* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1982 178 Pfam AP2 domain 9 58 IPR001471 GO:0003700|GO:0006355
Gso1g1982 178 SMART rav1_2 9 74 IPR001471 GO:0003700|GO:0006355
Gso1g1982 178 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677
Gso1g1982 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 4 122 - -
Gso1g1982 178 PRINTS Ethylene responsive element binding protein signature 10 21 IPR001471 GO:0003700|GO:0006355
Gso1g1982 178 PRINTS Ethylene responsive element binding protein signature 32 48 IPR001471 GO:0003700|GO:0006355
Gso1g1982 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 122 - -
Gso1g1982 178 Gene3D AP2/ERF domain 9 70 IPR036955 GO:0003700|GO:0006355
Gso1g1982 178 ProSiteProfiles AP2/ERF domain profile. 9 68 IPR001471 GO:0003700|GO:0006355
Gso1g1982 178 CDD AP2 8 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1982 Gso-Chr1 56369935 56370802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1982 9 99 AP2-EREBP Transcription Factor Family AT1G71520 67.742 9.83e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso1g1982 AP2 1.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1982 - - gmx:100803550 361.688