Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1974 ATGGACATGCCTTCTTCTAGTTCAAGCCATGTTGTTGGCGCTGCTTCCTCTGCATACCGTGGCGTCCGCAAGAGGAAATGGGGGAAGTGGGTGTCAGAAATCCGCGAGCCAGGAACCAAGACAAGAATCTGGCTCGGCAGTTTCGAGACTCCCGAGATGGCGGCGGCAGCATACGACGTCGCAGCGTTGCATTTCAGGGGCCGCGACGCCAGGCTCAACTTCCCTGAGCTCGCCAGCACCCTGCCACGCCCCGTCAGTAACAATGCTGACCACATACGCATGGCGGCGCACCAGGCCGCTCTCAGGCTCCGGACAAACCCCGCCGCTCCCGACACCGCTGGCTCCGCCGGTTCCTCCTCCTCTGCTCCCCTCACCGTGAGGCTCTCCCCCACTCAGATTCAGGCCATCAATGACTCCCCCATGGACTCACCACAAACTTGGATGCAAATGCCTGACACTTTCATGATGCATGATCAGTCCATGATGTTCGCAAGCAACGGCTATTCGTTTGAGGACAACGAGTGGGAGCATATGCAGAATGATTCTCTTTGGGATCCTTAG 561 0.5811 MDMPSSSSSHVVGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGRDARLNFPELASTLPRPVSNNADHIRMAAHQAALRLRTNPAAPDTAGSAGSSSSAPLTVRLSPTQIQAINDSPMDSPQTWMQMPDTFMMHDQSMMFASNGYSFEDNEWEHMQNDSLWDP* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1974 186 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Gso1g1974 186 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Gso1g1974 186 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Gso1g1974 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 9 185 - -
Gso1g1974 186 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Gso1g1974 186 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Gso1g1974 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 185 - -
Gso1g1974 186 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Gso1g1974 186 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Gso1g1974 186 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1974 Gso-Chr1 56325847 56327507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1974 17 186 AP2-EREBP Transcription Factor Family AT1G71450 61.850 8.48e-66 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso1g1974 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1974 - - gmx:100801245 357.451