Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1973 ATGGATCAAGAAACAACAAGAAGAAACACCATGCAAGAATGTCATGTGATAGCCCCAACAACAACAACGGCAACATCATCGTATCGTGGAGTTCGTCAGCGAAAATGGGGCAAATGGGTGTCCGAAATCCGTGAGCCTGGAAAGAAGAGCAGAATATGGTTAGGGAGCTATGAGTCACCAGAGATGGCTGCAGCAGCATATGACGTGGCAGCGTTACACCTTCGGGGACGAGCTGCAAGACTCAATTTCCCCGAATTGGTTGAGACGCTGCCACGTCCAACGAGTTCGAAACCCGAAGATGTCCAAGTGGCAGCACAACAAGCGGCGGTGATGTTCAGAATATCACCAACAATGTCACCTATTAACAATCATCAAGGATGTGTCAATGACAATAACATTATTAAGGGTAGTGTGGTTCCTGTGAGAGTGGGACTCTCACCCACACAAATTCAGGCCATCAATGAGTCCCCATTGGACTCACCAAAGATGTGGATGGTGCAAATGGCAGAGGCACTCAGGTTTGGTTTCGATGATCACTCTATGATGATGCTGCCTTCTGATGATGATGATTATGCTTTGGAGTTGAGTGGATGGGAAGAAATACAGCATGAATCTTTATGGGACTCTCCAGAATATATGTAA 642 0.4642 MDQETTRRNTMQECHVIAPTTTTATSSYRGVRQRKWGKWVSEIREPGKKSRIWLGSYESPEMAAAAYDVAALHLRGRAARLNFPELVETLPRPTSSKPEDVQVAAQQAAVMFRISPTMSPINNHQGCVNDNNIIKGSVVPVRVGLSPTQIQAINESPLDSPKMWMVQMAEALRFGFDDHSMMMLPSDDDDYALELSGWEEIQHESLWDSPEYM* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1973 213 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Gso1g1973 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 179 - -
Gso1g1973 213 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Gso1g1973 213 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Gso1g1973 213 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
Gso1g1973 213 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Gso1g1973 213 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Gso1g1973 213 CDD AP2 26 86 IPR001471 GO:0003700|GO:0006355
Gso1g1973 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 13 179 - -
Gso1g1973 213 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1973 Gso-Chr1 56309385 56310228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1973 26 208 AP2-EREBP Transcription Factor Family AT1G71450 46.995 1.00e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso1g1973 AP2 3.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1973 - - gmx:100788567 418.698