Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1956 ATGGATGAGGGAAAGCATAAATCGAGGAAAGAAAATCATGAGGTGAAAGATGGGGATTCTAAGAGGAGTCACCGTGACCGTGATAGAACTGGAGAAAGGGGTAAGGATAAAAACGATGGGAGGCACAGAGATAGGGAGAAGAGGGATCGTGAGTCCCGAAGACCTGAGAGAGAGAGGAGTACTGATTCTGAAGACAGGTATGATAGAGACAGGGAGAAGCGCAAAGATAAAGATAAGGATGTGGACCGAGAAAGAAGTCGAGATAAGAAAAGGGAAAGGGATAGGACAGACAGAGTAAGGGAGAAAGAAAGAGAGAGGGAAAGAAAAGAAGATAAGGAGAGGATCAGAGAGAGGGAAAGGGAAAGGGAAAGGAGGGATCATGAGAGAGAGAAGGAAAAGGAAAGAGAAAGGGGGAGGAGAGTACGAGGGAGGGAGAAGCGTAGGGAAGTTGATAGTGATTGCAGTGATGGTGAATCTAAGGAGCAGGACAGAAAGCGGCATAGGAAAGAGGATGGTGATTACAAGAGAGAGAGGGAAAGGAGTGTCAGCAAGCCAAGCAGGAAATCTGAGGAACATGAAGGAAGCCCAAGAAAAAAGAGTGGCGAAGATGATTCAGATACCAAAGATGAAGAGAAAAAACCTACCCGTGAAGAGGAGATGGAGGATGAACAAAAGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGGAGGAAGAAGGAAGAAGCAGAAAGAGAAAAACAAGGTGAAGCAAGTGCTAATGAACCTGAGTCTGGAAAGACCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGACTGGGTACTGGGAAGCAGACAGGTATGGATGTAGATGAAGATGACAAACCTGCTGATGAGGAGCCTAAGGATGTGATGGTGGTAGATACTGATAATGGGACAATTGCATCTGATTTACAGGATGGAACTGCTGGTGCTCCTGAAGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTAAACAATGCTGTGACATCGTCACTTTCTGATAAAGCCATTGATGTAAAACCCAAGGATAAAGGGAATGGGCAAAATCGTGGTGCACAGTCAAGGAAAGGTTCAAATAAGTCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGCAGATGATGAAGTTGAGAAGGATCCATTGGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAGACAAAAGCCGAGAAGCTTTCTTTAGTTGACCACTCAAAGATCGACTATGAACCATTCAAGAAAAACTTTTATATTGAAGTGAAGGAGATCTCAAAGATGACTCCTGAAGAAGCTGCAGTATACAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCAATAAAATCATGGCACCAGACTGGACTTCCTAGCAAAATTTTGGAGACCATAAAGAAGATGAACTTTGAAATGCCGATGCCTATTCAAGCTCAGGCGCTCCCTGTAATCATGAGTGGTCGAGATTGCATAGGGATTGCTAAAACTGGGTCAGGCAAAACACTTGCTTTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCTGGAGATGGACCTATTGGGCTCATTATGGCCCCTACAAGGGAACTTGTGCAACAGATTCACAGTGATATAAAGAAATTTGCCAAGGTACTGGGTCTCAGGTGTGTGCCTGTGTATGGAGGATCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGTAGTGGAAAAATAACTAACTTGCGTAGAGTCACTTATCTGGTAATGGATGAGGCTGATCGAATGTTTGACATGGGTTTTGAACCTCAAATCACACGAATTGTTCAGAATATTCGTCCAGATCGTCAAACAGTTCTGTTCTCTGCTACTTTCCCCCGTCAGGTTGAAATCCTGGCTCGTAAGGTCTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGCGTTGTGAACAAAGACATAACACAGCTAGTTGAGGTGAGGCCAGATAATGAAAGGTTCCTTAGACTCTTAGAAATATTGGGGGAATGGTATGAGAAAGGAAAGATTTTGATATTTGTTCACTCACAGGAGAAATGTGATAGTTTGTTCAAAGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCACGGGGCTAAGGACCAGACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACCAGTATTGCTGCCAGGGGATTAGATGTTAAGGAGCTCGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACCGGACGAGCTGGCCGAAAGGGTTGTGCCATTACATTTATTTCTGAGGAAGAGGCAAGATATGCACCTGATCTGCTGAAAGCCTTGGAACTATCTGAGCAGATTGTTCCGAATGATCTGAAAGCTCTTGCTGGTAGCTTTATGGCAAAAGTGAATCAAGGACTGGAGCAAGCTCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAAAGCAGCAAAGAAAGCACAAGCCAAGGAGTATGGGTTTGAAGAAGAAAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGATATCTCACAGCATTCTGCTTTTGCCCAGATTATTGCTGCCACTAAAGGGAATGCTCCTGCATTGCCTACTCCAATACTCCTACCATCCTTGCAAGTCTTGCCTGGGACAGGGCTACCTCTTCCTGCAAACGATGGGGCAGCTCGAGCAGCAGCAATAGCTGCTCTAAACTTGCAGGACAAGTTAGATAAAATACGATCAGAAGCATTACCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTCGCTGGAAGGTTACACACAAGGAAACTTTGGGCCCTATTTCTGAATGGAGTGGAGCTGCCATTACCACTAGGGGGCAGTTTTTCCCACCTGGCAAAATCCCAGGACCTGGGGAACGCAAACTCTACTTGTTCATTGAAGGTCCTACTGAGCACTCCGTTAAGTCAGCTAAAGCAGACTTGAAGCGTGTTTTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGAACTCAACCGGGCAAATACTCTGTTGTGTAA 3315 0.4425 MDEGKHKSRKENHEVKDGDSKRSHRDRDRTGERGKDKNDGRHRDREKRDRESRRPERERSTDSEDRYDRDREKRKDKDKDVDRERSRDKKRERDRTDRVREKERERERKEDKERIRERERERERRDHEREKEKERERGRRVRGREKRREVDSDCSDGESKEQDRKRHRKEDGDYKRERERSVSKPSRKSEEHEGSPRKKSGEDDSDTKDEEKKPTREEEMEDEQKRLDEEMEKRRRRVQEWQELRRKKEEAEREKQGEASANEPESGKTWTLEGESDDEEGLGTGKQTGMDVDEDDKPADEEPKDVMVVDTDNGTIASDLQDGTAGAPEDEEIDPLDAFMNSMVLPEVEKLNNAVTSSLSDKAIDVKPKDKGNGQNRGAQSRKGSNKSIGRIIPGEESDSDYADDEVEKDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKNFYIEVKEISKMTPEEAAVYRKQLELKIHGKDVPKPIKSWHQTGLPSKILETIKKMNFEMPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQIVPNDLKALAGSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEEKSDSEDEDEGIRKAGGDISQHSAFAQIIAATKGNAPALPTPILLPSLQVLPGTGLPLPANDGAARAAAIAALNLQDKLDKIRSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWSGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEHSVKSAKADLKRVLEDITNQALQLPGGTQPGKYSVV* 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1956 1104 Pfam DEAD/DEAH box helicase 509 680 IPR011545 GO:0003676|GO:0005524
Gso1g1956 1104 Coils Coil 99 137 - -
Gso1g1956 1104 MobiDBLite consensus disorder prediction 399 414 - -
Gso1g1956 1104 MobiDBLite consensus disorder prediction 900 914 - -
Gso1g1956 1104 Gene3D - 436 693 IPR027417 -
Gso1g1956 1104 MobiDBLite consensus disorder prediction 900 929 - -
Gso1g1956 1104 MobiDBLite consensus disorder prediction 1 333 - -
Gso1g1956 1104 MobiDBLite consensus disorder prediction 270 293 - -
Gso1g1956 1104 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 484 512 IPR014014 GO:0003724
Gso1g1956 1104 SMART helicmild6 745 826 IPR001650 -
Gso1g1956 1104 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 639 647 IPR000629 -
Gso1g1956 1104 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 153 939 - -
Gso1g1956 1104 Gene3D - 694 868 IPR027417 -
Gso1g1956 1104 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 721 865 IPR001650 -
Gso1g1956 1104 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 153 939 - -
Gso1g1956 1104 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 515 693 IPR014001 -
Gso1g1956 1104 Coils Coil 217 261 - -
Gso1g1956 1104 MobiDBLite consensus disorder prediction 1 261 - -
Gso1g1956 1104 CDD SF2_C_DEAD 705 835 - -
Gso1g1956 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 695 IPR027417 -
Gso1g1956 1104 CDD DEADc_DDX46 473 694 - -
Gso1g1956 1104 Pfam Helicase conserved C-terminal domain 718 826 IPR001650 -
Gso1g1956 1104 SMART ultradead3 503 708 IPR014001 -
Gso1g1956 1104 MobiDBLite consensus disorder prediction 357 418 - -
Gso1g1956 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 631 864 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1956 Gso-Chr1 56210793 56215914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1956 471 846 Eukaryotic Initiation Factors Gene Family AT3G19760 31.842 1.00e-56 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1956 K12811 - gmx:100784306 1839.7