Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1949 ATGAAGCTGAAGACATATGCGGGTCTTAGTATCATTGCAACTCTGGCTATTATATATCATGCGTTTAACAGTAGGGGCCAGTTTTATCCGGCAATGGTGTATCTGTCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTCTTTATGTGTATTCTATGGCAATTAACCAAGAAGGTGTTCCTGGGTTCCCTCCGAGAGGCAGAGGTTGAGAGGCTTAACGAGCAATCCTGGAGGGAGGTTATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAGGACTTCTCTGTCACATTCCTTGCAATGGTCACAGCATTGTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTCGAGTACATTGAGACCACTCCTTCGGTTCCCATGTTGTCCCATGTTCGAATTGTATCTTTTATGGGCTTCCTTCTTCTTCTTGATAGCCTTTTCTTATACAGTTCTATGAAGCATTTGATAGAAACTTGGCAGGCTTCGGTTTCACTATTCTTTTGTTTCGAGTACATGATACTGGCAACTACAACGGTGTCAATTTTTGTAAAATATCTTTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTCTTCACATTTTATCTGGAACTCATTAGGGACCTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTTGTAATTTTTGTAAACTATGGTATTCCCTTGCACCTTATACGGGAGCTGTATGAGACGTTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGTTATCGTAAAATCACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCTTGAAGAACTTAATGCAAGTGATGCAACCTGCATTATTTGTCGTGAAGAGATGACGACGGCCAAGAAACTTGTATGTGGACATCTTTTTCATGTTCATTGTCTCCGATCATGGCTGGAGCGGCAGCACACTTGCCCCACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGGACAACTTCAGCTGCAGGGCAGCAAGGATCACAGTCAGATGCCCATCAACAGGGAACAACTGGGACAGGCAGTGGAAGCACTGCTCAGACTGAGGCTACTGATAGTTTGAGTCGACATCAAGCTAGACTCCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTGTACCCCTCTATGAATTCTTTTGTATGCTCTCCTGGATACACTCTTCATCCCCCAGTTCAAATATATATGGCTGAATCTTCTGATAAGGACCGTAATGGAGAGCAAACTTCCAGTGAAGAAGCACAAAGGCAGTTTCTTATCGCTGGTAGACCACCAAATCTATCCTTTCCTCCAATGCAAAACTTCCATTTTCTACCTTCCCAAGCACATGCATCCCCTGTGAATTATGGAGAGGGGTTTGAAAATGATCCAAATATCCCAAACTCTCAGCTTGAAGCTTATAGAAAACTTCTTCAATGCCAGATTCAGAACCTACAGATTCTGCAAAATCAGCTCGAGATGCTTCAGAGGATAAAGGCTGATAGAAGTGTAGATGAGGGCACGCCATCATCAGATAGCAGAGGCAAGAGTGTCATTTCCTCATCATCTGGATCTGGTCATGGTTATCGTGAGGATATTCGAGATGGAAAAGCATAA 1665 0.43 MKLKTYAGLSIIATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHVRIVSFMGFLLLLDSLFLYSSMKHLIETWQASVSLFFCFEYMILATTTVSIFVKYLFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATLEELNASDATCIICREEMTTAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTSAAGQQGSQSDAHQQGTTGTGSGSTAQTEATDSLSRHQARLQAAAAAASIYEKSYVYPSMNSFVCSPGYTLHPPVQIYMAESSDKDRNGEQTSSEEAQRQFLIAGRPPNLSFPPMQNFHFLPSQAHASPVNYGEGFENDPNIPNSQLEAYRKLLQCQIQNLQILQNQLEMLQRIKADRSVDEGTPSSDSRGKSVISSSSGSGHGYREDIRDGKA* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1949 554 CDD RING-H2_synoviolin 288 329 - -
Gso1g1949 554 MobiDBLite consensus disorder prediction 526 543 - -
Gso1g1949 554 Coils Coil 487 514 - -
Gso1g1949 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Gso1g1949 554 PANTHER RING ZINC FINGER PROTEIN 1 441 - -
Gso1g1949 554 SUPERFAMILY RING/U-box 271 335 - -
Gso1g1949 554 MobiDBLite consensus disorder prediction 518 554 - -
Gso1g1949 554 SMART ring_2 291 328 IPR001841 -
Gso1g1949 554 MobiDBLite consensus disorder prediction 338 376 - -
Gso1g1949 554 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
Gso1g1949 554 Pfam Ring finger domain 290 329 IPR001841 -
Gso1g1949 554 PANTHER - 1 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1949 Gso-Chr1 56142485 56147480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1949 1 538 C3H Transcription Factor Family AT3G16090 64.391 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1949 K10601 - gmx:100816441 993.03