Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1946 ATGGATCCTTTTGATGATATTCTACCAGTGGCTCCTACCGCACGTACTCGGCCGGGTGCCAAGTTTATTCCAAAGGCCAAATCGAAACAGCTTCCTCGAAAGGAAATACCGGTGTCAGAACATGCCACCTCATCTAAGGATGGAATTTTGGGGAATGAATGTCAAAATGCAGTTGCTTCAGCGGAAGAGTCTAAGGGGTTCATTCATCATACACAGGTAGAAATTCCAAATTCGGGGGATTCCACAAATTCTAAACAAGCTAGTGTGAAAGGAGATACTGCAGCCTTGGTGGATGATTCCACAATCACAGCATCTGAAGTTGATGCTAATCAGAATTCTATAAACTTTTTAAAACCAGCATGTGAGGTTACTGAGGGAGATCCAGTAGACTTTGAGGGGGTCAATAATGGCACAACACAACCAGTTCACCATGCTAATGCTGTAGAAAATGAATTGAATAATGTGGCTGCTCCATCTCCAACTTGCTCAACCATAGATAGGATGAAAGAACAACCTAAAAATGGGGAAGATTCATTTCTTGATAGCAACAAATGTTTGGAACTTATTGACAATTCAATCCTAGTTGGAATGGATTTGGGCTTCAAAAGTTCTTCAGATGATAAGATTGCAATAATTCAGAGCAACTTTGATTTAAAGTCAAACTTTTGTAAAAAACAAGAGGGAGTATCTGCAGAATTTGAATTGGATCCTTTCAGCAACATCCTCCCTAATCCTGTTGCTAGGAATGTTCATAAATTTAAACCCAAGATTAAGCCACGACCTAGAGCAGGCAATGTGCCAGCAATTGCTTCTGATTCATCTAATGTTAGGATGGAAAAATCTGTTGAGTTGCCTACATCTTGCACAAACAACTTTCAATCTTTTCTGTCTTGTGGTGATGGCAGTGGTGGAGTAAACCAATCAACCAGTTTACCTTTGCCAACATCAGAAATTCTTAGGACAACTGAATTACCCAAGAAGTTTGATGATAGTAGCTCAAGTATTCCATTTTCTGAAGACAATAAGAGCTTGGCAGCTGCAATTCCTTCCCAGCTGGATTCCCCAAATGTAATGCTTTCAGAGGATGCAGTTCATAATGGAACTACAGATTGGTCTTCTAGTTTTCGTAAATCACCCGGAGAGGCTGCGGACATTTTTTCTGGGCTGGAATCCCTTCATGACTTTATCACCCAAGCTGCCACTGGTACAGGTAAACCAGCCCTTCATTCTTTCAATGGGAAGAGTGGAGAAGAAAATTTTGTCACACCTGCTTCTAGTTCTATTAACTCTTTTGGGGAATGTGATATTACCCAAGCTCAAAGGTGTCCTGAGTATCATACCCCCCAAGATTCATTAACCTTCAATGAAGCCGCAGTCCTCAATGAGGATAATACTCACTCTAGCAATAGGAGGTCGGAAACAGAGGAAATTGTGGACTTGAATCCTGCCTGCGCGGGTGATGATGTGATTGATTATCAATTCATGAAATCTGGCAAAGATCCAACTGGAATTCCAGTGCATGAAGAGTTGACAAATGCTGCAGATAGTCCCACATTGGCTGATTTTTTGCATGCAGATGTTACAAGGGAAAAAGAAGATTCTAATAAGAGAAAAAATGATGGTTCAACATCATGTTCTCTAAGGAAGAAGAGAAGATTTATTGCTGGTGAGGAGGATAAAGGTGCTAAAACCTCAAGGCAGCTGAGAAAACAAGCAGCTCATAAACCTGCAAACAGTTCATTCAATGAGGATGTTGAAGATAATAATGACCTTGACCCTCCTTATAATTCTAATGGAGATGAACTTCAAGAAAATGATGACGACTATGAAGTCAATTATCCATCCAGGAAGAAAAGAGTATCAAAAAGTTCACAGAAGAAATCTATGGCTAAAAGTGGAAAAACATCTCAAAAGCCTAAGAAGGCTTATGAAGATTTAGAAAAAACTGAGGAACCTCTCAAAAAGTTCTCTCATTCAACCCGACGAAAAAAAAGATGCGTGGACAAGGCTCTACTGGAAATTCCTGAGGATGAACTTGATCGTTTAAGAATACCTATTAAAGATATTATTTTACTTGAAGAACATAGGGAGCGGCTGGCGAAAAAAGAGGCGATGACTTCAAATATTTCTTCCACCAATCAAAGTGGTGGAGATTCTCTTCATGAGGCTGGTGCTTATAATGAGGGGGCTTATAATGAGGGAGCTTATGATGATGGAGCTTATAATGACGGGGAGTTCTTAGGTTCAGAAGATGGTAGAGACCCATATGATGATCAGGCCAATGAAGGGATTGCGTCAACTTCTGTTTTACTGAATTACCAGTCTTTCAGGGAAAAGACACCTAGGGGGAAATGGTCAAAACAAGAAACTGAACTGTTTTATGAGGCTGTTAGGGAGATGGGCACAGATTTTTCTATGATACAAGAGATTTTCTTCCCTAATAAATCACGGCATCAAATTAAGTTGAAGTACAAGAATGAAGAGCGGCAGCAGCCTTTACAGTTAACTGATGCTGTAAATAACCGTGCAAAAGATCACCCTCATTCTAAGTTGTTTATTGAACGACTACAACTAGCTTCTGCCAAGGCAGAAGACCCCTGTAGAGATGCCTCAGATTTCGTGATGGCGGAGGAGGTTGTGGACCTAACAGCTGGAACTAATGAAGAGGTTGCGGAGGTTGCAACAACAAAGGAGGATGCAGATGTTAAAGAACAGGAAGATTCTGTAGCAGTTCCTAGTCCAGAGCAATCTGATGACAGTGAGGATGACTTTCAAAGATGGTCTCAGTACAAAAGTGGCTATCAGTGA 2808 0.4071 MDPFDDILPVAPTARTRPGAKFIPKAKSKQLPRKEIPVSEHATSSKDGILGNECQNAVASAEESKGFIHHTQVEIPNSGDSTNSKQASVKGDTAALVDDSTITASEVDANQNSINFLKPACEVTEGDPVDFEGVNNGTTQPVHHANAVENELNNVAAPSPTCSTIDRMKEQPKNGEDSFLDSNKCLELIDNSILVGMDLGFKSSSDDKIAIIQSNFDLKSNFCKKQEGVSAEFELDPFSNILPNPVARNVHKFKPKIKPRPRAGNVPAIASDSSNVRMEKSVELPTSCTNNFQSFLSCGDGSGGVNQSTSLPLPTSEILRTTELPKKFDDSSSSIPFSEDNKSLAAAIPSQLDSPNVMLSEDAVHNGTTDWSSSFRKSPGEAADIFSGLESLHDFITQAATGTGKPALHSFNGKSGEENFVTPASSSINSFGECDITQAQRCPEYHTPQDSLTFNEAAVLNEDNTHSSNRRSETEEIVDLNPACAGDDVIDYQFMKSGKDPTGIPVHEELTNAADSPTLADFLHADVTREKEDSNKRKNDGSTSCSLRKKRRFIAGEEDKGAKTSRQLRKQAAHKPANSSFNEDVEDNNDLDPPYNSNGDELQENDDDYEVNYPSRKKRVSKSSQKKSMAKSGKTSQKPKKAYEDLEKTEEPLKKFSHSTRRKKRCVDKALLEIPEDELDRLRIPIKDIILLEEHRERLAKKEAMTSNISSTNQSGGDSLHEAGAYNEGAYNEGAYDDGAYNDGEFLGSEDGRDPYDDQANEGIASTSVLLNYQSFREKTPRGKWSKQETELFYEAVREMGTDFSMIQEIFFPNKSRHQIKLKYKNEERQQPLQLTDAVNNRAKDHPHSKLFIERLQLASAKAEDPCRDASDFVMAEEVVDLTAGTNEEVAEVATTKEDADVKEQEDSVAVPSPEQSDDSEDDFQRWSQYKSGYQ* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1946 935 Gene3D - 785 850 - -
Gso1g1946 935 Pfam Myb DNA-binding like 775 848 IPR039467 -
Gso1g1946 935 MobiDBLite consensus disorder prediction 704 760 - -
Gso1g1946 935 MobiDBLite consensus disorder prediction 1 48 - -
Gso1g1946 935 SUPERFAMILY Homeodomain-like 783 832 IPR009057 -
Gso1g1946 935 PANTHER TRANSCRIPTION FACTOR TFIIIB COMPONENT B'' HOMOLOG 251 924 - -
Gso1g1946 935 MobiDBLite consensus disorder prediction 704 720 - -
Gso1g1946 935 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 251 924 - -
Gso1g1946 935 MobiDBLite consensus disorder prediction 528 566 - -
Gso1g1946 935 MobiDBLite consensus disorder prediction 528 660 - -
Gso1g1946 935 CDD SANT 784 826 IPR001005 -
Gso1g1946 935 ProSiteProfiles Myb-like domain profile. 777 828 IPR001005 -
Gso1g1946 935 MobiDBLite consensus disorder prediction 894 935 - -
Gso1g1946 935 SMART sant 781 830 IPR001005 -
Gso1g1946 935 MobiDBLite consensus disorder prediction 894 908 - -
Gso1g1946 935 MobiDBLite consensus disorder prediction 637 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1946 Gso-Chr1 56125396 56132495 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso1g1946 Myb_DNA-bind_7 1.3e-23 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1946 K15198 - gmx:100792788 1842.78