Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1945 ATGGGAACACAACCCCAGCAAACATTTTGGGAGGAAGAGGATGAGGAGATGCAAGGCCGTGGAACCACTATCTCAGGTCAATCAATGTCAACAAGCAGAAGTTTGGGGTCTCCATCCAGCCGGAGTGAACAGACAATGGCAACACCTGCTAGTGATAGCACTTTTCTTAGGTTAAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGTGCAGTTGCTAGCAAGAAGAAAAAGAGGGGCCAACGTGCTATTGGAGGTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCTGATGAACTTGTGGCTGAATTTGCTGATCCAATCAATGGTGTTTCAACTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTCCCTCGTACTAGTCTAAGTGATATGGAAGAGCTAAAGTCGGAGCGTCTTGGGCTAAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAGCTGGAGGAGCAATACATAGGTCTTCAGAAACTTATACAACGAAATGAGCAACTATATAGCTCAGGAAATGCTCCCAATGGAGGTGTATCTTTGCCCTTCATTCTGGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGTTGCATGATGATAACTATGTTCTCAAGGCAATGAAACTTTGTGAGGGATCTCATAATGATAATACAACAGACAATCCTACAGATGGTGGTGAAGGTTCTAGCATATATGCACAGGTTCCTACTTCTGTTTCAAACCCTCCAAATAGGCCTCCTTCATCTCCACCACTCCCTGGAATATTGAAGGCAAGAGTTAAGAACGAGCATTGA 1017 0.4297 MGTQPQQTFWEEEDEEMQGRGTTISGQSMSTSRSLGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAIGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINGVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDMEELKSERLGLRNRIEKKAAYLQELEEQYIGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKLCEGSHNDNTTDNPTDGGEGSSIYAQVPTSVSNPPNRPPSSPPLPGILKARVKNEH* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1945 338 Gene3D - 86 178 IPR036388 -
Gso1g1945 338 CDD DP_DD 178 281 IPR014889 -
Gso1g1945 338 Gene3D Transcription factor DP 179 313 IPR038168 -
Gso1g1945 338 SUPERFAMILY E2F-DP heterodimerization region 180 295 IPR037241 -
Gso1g1945 338 Coils Coil 189 223 - -
Gso1g1945 338 PANTHER TRANSCRIPTION FACTOR DP 17 338 IPR015648 GO:0005667|GO:0051726
Gso1g1945 338 PIRSF Txn_factor_DP 4 338 IPR015648 GO:0005667|GO:0051726
Gso1g1945 338 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Gso1g1945 338 PANTHER TRANSCRIPTION FACTOR DP 17 338 - -
Gso1g1945 338 MobiDBLite consensus disorder prediction 289 338 - -
Gso1g1945 338 SMART DP_2 180 336 IPR014889 -
Gso1g1945 338 Pfam Transcription factor DP 181 295 IPR014889 -
Gso1g1945 338 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Gso1g1945 338 MobiDBLite consensus disorder prediction 20 55 - -
Gso1g1945 338 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Gso1g1945 338 MobiDBLite consensus disorder prediction 289 313 - -
Gso1g1945 338 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1945 Gso-Chr1 56116756 56123742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1945 86 282 E2F-DP Transcription Factor Family AT5G02470 54.902 4.11e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gso1g1945 DP 3.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1945 K04683 - gmx:100781272 638.647