Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1941 ATGGGGTGCATATGCTCAAAAAACTCTTCAGACAAAGACAACGTTGATGAATATGAGAAAGAGAAAGAAAAAGAAAAAGAGTCGAACAAGTCTTCAGTGCAACTGGTTGCTCCTGCTGTCTCAACTGCACAGTTAGATGGTGGTAGCATGGATGGTTCGACGCCCCGAATGGCTAAGTCATCATCACAAGTGACTAGAGGGTTTGTCAAAGTGCCATCAGATGATAAAAGCAACCACTTTGATGCCACAAGAAGCCAGCACCAGAGGTGCAACACCATGAGTGGTGGTGTAGGTGAAAGAAAGCCACTGATGAGTAGAATCCTTAGCGTGCAAAATTTTGCAGGAGAACATGTTGATGCTGACTGGCCAGTGTGGTTATCTTTAGTGGCAGCAGAAGCCATCAAAGGGTGGGTGCCTCGACGAGCAGACTCTTTTGAAAAATTAGACCAAATTGGACAAGGGGCCTATAGCAGTGTGCATAAAGCTCGTGACCTTGAGACCGGTAAAATTGTGGCTTTGAAGAAGGTTCGCTTTTCAAGTACAGAACCAGAAAGTGTCCGATTCATGGCAAGGGAAATCTATATATTGCGTCAACTTGACCATCCTAATGTCATGAAGCTTGAGGGTATTGTCACGTCTAAAACGTCCACCAGTTTGTACCTTGTTTTTGAATACATGGAGCATGACCTTGCTGGGCTAGCAACTATTCATGGCGTGAAGTTAACTGAACCAGAGATAAAATGTTATATGCAGCAGCTGCTTCGTGGGCTTGAACACTGCCACAGTCGGGGTGTGTTGCACCGTGACATCAAGGGTTCAAATCTTCTGATTGACAACAATGGAAATCTTAAGATTGCAGATTTTGGTCTTTCAACAGTGTATGATCCTGATAAAAAACAACCATTGACTAGCCGTGTTGTGACTTTGTGGTATAGGGCACCTGAGCTTTTGCTCGGTGCTACAGATTATGGAGCTGCAATTGACATGTGGAGTGTTGGTTGCATTCTAGCCGAATTGCTGGTGGGGAAGCCGATCATGCCTGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAACTTTGTGGTTCGCCATCTGAAGACTATTGGCAGAGAACAAAATTACCCCATGCAACAAGTTTTAAGCCACAACACCCTTACAATCGCCAAGTTTCCGAAACATTTAATAAAAACTTTTCTCCCACGGCATTGGCTCTTGTTGATACGCTACTTACAATAGAACCAGAAGGTCGAGGATCAGCAACTTCCGCACTTGAGAGTGAGTTCTTCACGACAAACCCTTTACCTTGTAATCCCTCAAGTTTACCCAAGTTTTCACCAAGCAAGGATTTTGATTCCAAGCGTCGAGAAAAGGAAGCTACAAGGAAAAATGTGGAATCTGTTAAAGGATGTGGACCAGCATCTGTTTTTAGGGAAGCAGCAGATACCAAAGTACTGGGTTCACCAGATTATATCGCTCGGGGAAATATTTCTATGCGGGGCAAGTCAAATACTAGAATGTCCCGTCTTAAATATCAATCAGAAGAGGATGGCGAGTCTAAAGACAATGGTGAAGCAAGCATGATAAGTCTACACAATAAGGGCTACACACATTCTACTTCAATGATGCACAGCCGTATGGCAGCAGGACCAACCTCATTGAGGAAGAATTCAGAATTACAGACACAGAGCTCTCATGTGAATCATGCAGCAGCAGAATTATCTACCTCTTCCGTTAAAAAGGAACCGGGCATGTCTGTTCGTGAACCTGGGATGGGTTATATGCCGAAGAAAAATAGGATCCACTGCTCTGGACCATTGTGTGGCAACATTGATGACATGCTTAAAGAGCATGAGCGATTAATGCAAGATGTTTTCCGTAGCGTCAAAAAAACCAATCCGTGA 1905 0.4378 MGCICSKNSSDKDNVDEYEKEKEKEKESNKSSVQLVAPAVSTAQLDGGSMDGSTPRMAKSSSQVTRGFVKVPSDDKSNHFDATRSQHQRCNTMSGGVGERKPLMSRILSVQNFAGEHVDADWPVWLSLVAAEAIKGWVPRRADSFEKLDQIGQGAYSSVHKARDLETGKIVALKKVRFSSTEPESVRFMAREIYILRQLDHPNVMKLEGIVTSKTSTSLYLVFEYMEHDLAGLATIHGVKLTEPEIKCYMQQLLRGLEHCHSRGVLHRDIKGSNLLIDNNGNLKIADFGLSTVYDPDKKQPLTSRVVTLWYRAPELLLGATDYGAAIDMWSVGCILAELLVGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQRTKLPHATSFKPQHPYNRQVSETFNKNFSPTALALVDTLLTIEPEGRGSATSALESEFFTTNPLPCNPSSLPKFSPSKDFDSKRREKEATRKNVESVKGCGPASVFREAADTKVLGSPDYIARGNISMRGKSNTRMSRLKYQSEEDGESKDNGEASMISLHNKGYTHSTSMMHSRMAAGPTSLRKNSELQTQSSHVNHAAAELSTSSVKKEPGMSVREPGMGYMPKKNRIHCSGPLCGNIDDMLKEHERLMQDVFRSVKKTNP* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1941 634 MobiDBLite consensus disorder prediction 448 465 - -
Gso1g1941 634 MobiDBLite consensus disorder prediction 1 97 - -
Gso1g1941 634 PANTHER CELL DIVISION PROTEIN KINASE 72 599 - -
Gso1g1941 634 MobiDBLite consensus disorder prediction 509 523 - -
Gso1g1941 634 Gene3D Phosphorylase Kinase; domain 1 132 227 - -
Gso1g1941 634 CDD STKc_CDK9_like 145 430 - -
Gso1g1941 634 Coils Coil 8 35 - -
Gso1g1941 634 SUPERFAMILY Protein kinase-like (PK-like) 138 437 IPR011009 -
Gso1g1941 634 ProSiteProfiles Protein kinase domain profile. 145 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1941 634 MobiDBLite consensus disorder prediction 435 470 - -
Gso1g1941 634 SMART serkin_6 145 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1941 634 MobiDBLite consensus disorder prediction 46 68 - -
Gso1g1941 634 Pfam Protein kinase domain 145 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1941 634 MobiDBLite consensus disorder prediction 10 30 - -
Gso1g1941 634 MobiDBLite consensus disorder prediction 494 526 - -
Gso1g1941 634 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 72 599 - -
Gso1g1941 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Gso1g1941 634 Gene3D Transferase(Phosphotransferase) domain 1 228 470 - -
Gso1g1941 634 ProSitePatterns Protein kinases ATP-binding region signature. 151 174 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1941 Gso-Chr1 56097864 56102599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1941 137 469 Core Cell Cycle Gene Families AT5G10270 52.722 6.82e-119 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso1g1941 Pkinase 3.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1941 K08819 - gmx:100791743 1244.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1941 1 56097864 56102599 Gso11g0130 11 1043815 1049021 GST