Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1937 ATGCAAGGAAGCGCAGCTGACGGTGAAGCCTTGGATTTCGAGCCTGAGGACGATGACTTGATGGACGAGGACGGCGCCCCCGACGCCGACGCTTCTCCGCCTCAACCCAAGCTCAAATCCGCCATCACCGCCGCCGCCGCCCCCAAAAAGACCAAGGGTCGCGGATTCCGGCAGGACACCGACGCCAACCGCGACACTCGCCTCTCCGGCTCCGACTTCGACTCTCTCACCACCGAGGGCGGCCCTGGCCCTCAAAGATCCATTGAAGGATGGATCATTCTGGTCACCGGCGTGCACGAGGAAGCGCAAGAAGACGATTTGCAAAACACCTTTGGTGAATATGGAGAGATTAAGAACCTGCATTTGAATCTTGATCGCCGCACTGGTTTTGTCAAAGGTTATGCGTTGATTGAATATGAGCGTGCTGAGGAAGCTCGAAATGCAATAGAGAATTTGAATGGATCTGAGCTTCTTACCCAAACCATTTATGTTGACTGGGCCTTCAGCAGTGGACCTATTAACGAGTCAGTCAGAAGAAAGAATGCTAGACCACCTCGTGAACGGCGTTCCAGGAGCCCCCGGAGGAGATATTGA 594 0.5455 MQGSAADGEALDFEPEDDDLMDEDGAPDADASPPQPKLKSAITAAAAPKKTKGRGFRQDTDANRDTRLSGSDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNTFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENLNGSELLTQTIYVDWAFSSGPINESVRRKNARPPRERRSRSPRRRY* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1937 197 PANTHER RNA-BINDING PROTEIN 8A 7 197 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gso1g1937 197 MobiDBLite consensus disorder prediction 52 68 - -
Gso1g1937 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 162 IPR000504 GO:0003723
Gso1g1937 197 MobiDBLite consensus disorder prediction 176 197 - -
Gso1g1937 197 PRINTS RNA binding motif protein 8 family signature 45 57 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gso1g1937 197 PRINTS RNA binding motif protein 8 family signature 82 96 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gso1g1937 197 PRINTS RNA binding motif protein 8 family signature 138 154 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gso1g1937 197 PRINTS RNA binding motif protein 8 family signature 156 168 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Gso1g1937 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 169 IPR000504 GO:0003723
Gso1g1937 197 SUPERFAMILY RNA-binding domain, RBD 84 195 IPR035979 GO:0003676
Gso1g1937 197 CDD RRM_RBM8 85 172 IPR033744 GO:0003729
Gso1g1937 197 SMART rrm1_1 92 165 IPR000504 GO:0003723
Gso1g1937 197 MobiDBLite consensus disorder prediction 183 197 - -
Gso1g1937 197 MobiDBLite consensus disorder prediction 1 87 - -
Gso1g1937 197 PANTHER BNAA05G15240D PROTEIN 7 197 - -
Gso1g1937 197 MobiDBLite consensus disorder prediction 10 26 - -
Gso1g1937 197 Gene3D - 23 183 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1937 Gso-Chr1 56072301 56075138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1937 93 167 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 9.82e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1937 K12876 - gmx:100778595 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1937 1 56072301 56075138 Gso11g0134 11 1066958 1069815 GST