Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1930 ATGGTTTGTTGGTGCTGGTGTTACATCGAATCTATGTTTCAAGAAGAAGGGTTATCTTCTGTAACTTCTTCACCTCTTCAGTTCTTTTCCATGATGTCTCTTTCAGTTTCACCTAGCTTAGGATCTCCCTACCAAATGAAATGCGAGCAAAGGGGTTTGGTATTAATCCATTTGTTGCTCGCTGGTGCTAATTTTGTAGCCACCGGTGATTTACAAAATGCAAACCTCACACTTGAGCAGATTTCCCAGCATGCCTCTCTTGATGGGGATACTATGCAGCGAATTGCTTCTTATTTTTCTGAAGCACTCGCTGATCGGATACTTAAAACATGGCCTGGCATCCACAGGGCCCTCAATTCCAGCAGAATAACTATGGTTTCTGATGAAATTCTTGTTCAAAAGCTCTTCTTTGAGCTTTTACCCTTCCTCAAGTTCTCATATATCCTCACTAATCAGGCTATTGTTGAAGCCATGGAAGGGGAGAAAATGGTGCATATAGTTGATCTCTATGGGGCCGGACCGGCACAGTGGATTTCTCTCCTCCAAGTTTTGAGTGCACGTCCTGAAGGTCCTCCCCATTTGAGAATCACCGGGGTCCATCACAAGAAAGAGGTTCTGGATCAGATGGCTCATAAACTCACTGAAGAGGCGGAAAAGTTGGATATCCCATTCCAATTCAACCCTGTGCTAAGCAAGTTGGAAAATCTTGATTTCGACAAACTTCGCGTTAAAACTGGGGAGGCACTGGCAATAAGTTCTATTCTGCAGTTGCACTCCCTTTTGGCCTTGGATGAAGATGCCTCGCGGAGAAAATCGCCTTTTTTGTCAAAAAACTCAAATGCAATTCACCTGCAGAAAGGCCTCCTCATGAACCATAACACACTGGGAGATTTGCTTGACGGCTATAGCCCGAGTCCTGATTCGGCCTCATCCTCACCAGCAGCGTCTTCATCTGCTTTGATGAATTCAGAGAGCTTTCTTAATGCCTTGTGGGGGTTATCCCCAAAAGTCATGGTTGTAACTGAACAAGACTTTAACCACAACTGTTTGACCATGATGGAGAGACTGGCAGAAGCTCTATTTTCTTATGCTGCATATTTTGATTGCTTGGAGTCCACGGTCTCAAGAGCATCCATGGACAGATTAAAACTTGAGAAGATGCTTTTTGGCGAGGAGATAAAGAACATCATAGCTTGTGAAGGATGTGAAAGAAAAGAAAGGCACGAAAAGATGGATAGGTGGATCCAGAGACTTGACTTATCTGGATTTGCAAACGTGCCTATAAGCTATTATGGGATGCTGCAGGGAAGGAGGTTCTTGCAGACCTATGGTTGTGAGGGGTACAAGATGAGGGAGGAATGTGGTCGGGTGATGATATGCTGGCAGGAGCGATCCTTGTTTTCCATAACAGCTTGGAGACCAAGGAAGTAA 1431 0.4451 MVCWCWCYIESMFQEEGLSSVTSSPLQFFSMMSLSVSPSLGSPYQMKCEQRGLVLIHLLLAGANFVATGDLQNANLTLEQISQHASLDGDTMQRIASYFSEALADRILKTWPGIHRALNSSRITMVSDEILVQKLFFELLPFLKFSYILTNQAIVEAMEGEKMVHIVDLYGAGPAQWISLLQVLSARPEGPPHLRITGVHHKKEVLDQMAHKLTEEAEKLDIPFQFNPVLSKLENLDFDKLRVKTGEALAISSILQLHSLLALDEDASRRKSPFLSKNSNAIHLQKGLLMNHNTLGDLLDGYSPSPDSASSSPAASSSALMNSESFLNALWGLSPKVMVVTEQDFNHNCLTMMERLAEALFSYAAYFDCLESTVSRASMDRLKLEKMLFGEEIKNIIACEGCERKERHEKMDRWIQRLDLSGFANVPISYYGMLQGRRFLQTYGCEGYKMREECGRVMICWQERSLFSITAWRPRK* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1930 476 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 272 IPR005202 -
Gso1g1930 476 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 324 375 IPR005202 -
Gso1g1930 476 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 378 475 IPR005202 -
Gso1g1930 476 ProSiteProfiles GRAS family profile. 46 473 IPR005202 -
Gso1g1930 476 Pfam GRAS domain family 55 473 IPR005202 -
Gso1g1930 476 PANTHER BNAA06G02820D PROTEIN 324 375 IPR030008 GO:0003700|GO:0005634|GO:0009739
Gso1g1930 476 PANTHER BNAA06G02820D PROTEIN 10 272 IPR030008 GO:0003700|GO:0005634|GO:0009739
Gso1g1930 476 PANTHER BNAA06G02820D PROTEIN 378 475 IPR030008 GO:0003700|GO:0005634|GO:0009739
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1930 Gso-Chr1 55990450 55994049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1930 11 476 GRAS Transcription Factor Family AT1G50420 61.570 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso1g1930 GRAS 4.8e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1930 - - gmx:100775380 894.034