Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1916 ATGTGCATGCCCATACGTGATCACACATGCAGCTTTTCAAACAGTAATAACGGACACAGTTGCCAGATGCATTCCAGCAACCCAAAGAAGAGAAAGCGTCCTTGCGACGACGACTGCTACACCAAGCCCGCCGCATCACACGGTTTCATATCCGTGATAGGGAGGCGACGCGCGATGGAGGACGCGGTCAAGGTGGTTCCAGGTTTGGTGGCGGCGGAACAACGCTGTGGCAGTTACGATTTCTTCGCTGTTTACGACGGCCACGGAGGGACCTTGGTGGCAAACGCTTGCCGCGACAGGCTGCACTTGTTGCTGGCGGAGGAAGTTAGGGAGAGCGCAGGAGGCAGAGGCTTGGATTGGTGCCAGGTCATGTGTTCGTGTTTCATGAAGATGGACAAGGAAATTGGAGTTGGTGAGGAGCAAGATGGCGGCGGCGGAAACACCATGGGTTCGACGGCGGCCGTGGTGGTGGTCGGAAAGGAGGAGATTGTGGTGGCCAATTGTGGTGACTCGAGGGCGGTGTTGTGCCGTGGCGGTGTAGCTGTGCCACTTTCACGTGACCATAAGCCTGATCGTCCAGACGAAAAAGAGAGGATAGAAGCGGCAGGTGGGAGAGTCATTAATTGGAACGGAAATCGTGTTTTGGGAGTACTTGCTACTTCCAGATCCATAGAACCAGAGACGAAGGTGTACGCACGAACAGAGGCAGATGAGTTTGTGGTGGTGGCGAGTGACGGGCTGTGGGATGTAGTGTCTAACAAGTATGTTTGTGAGGTTGTACGAGGTTGCCTCCATGGGAAAATGAGGAGGAAATTAAAAGAGGAGCCCATTATAAGCTATGCAACAGAAGCTGCAGCGTTGTTGGCTGAGTTGGCTATGGCTCGTGGAAGCAAAGACAACATCAGTGTCATAGTCATCCCACTCAACACTACTACAACTTGA 942 0.5318 MCMPIRDHTCSFSNSNNGHSCQMHSSNPKKRKRPCDDDCYTKPAASHGFISVIGRRRAMEDAVKVVPGLVAAEQRCGSYDFFAVYDGHGGTLVANACRDRLHLLLAEEVRESAGGRGLDWCQVMCSCFMKMDKEIGVGEEQDGGGGNTMGSTAAVVVVGKEEIVVANCGDSRAVLCRGGVAVPLSRDHKPDRPDEKERIEAAGGRVINWNGNRVLGVLATSRSIEPETKVYARTEADEFVVVASDGLWDVVSNKYVCEVVRGCLHGKMRRKLKEEPIISYATEAAALLAELAMARGSKDNISVIVIPLNTTTT* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1916 313 CDD PP2Cc 46 308 IPR001932 -
Gso1g1916 313 Gene3D - 41 312 IPR036457 -
Gso1g1916 313 ProSiteProfiles PPM-type phosphatase domain profile. 46 308 IPR001932 -
Gso1g1916 313 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 20 310 - -
Gso1g1916 313 PANTHER ALPHABET, ISOFORM E-RELATED 20 310 - -
Gso1g1916 313 Pfam Protein phosphatase 2C 47 301 IPR001932 -
Gso1g1916 313 SMART PP2C_4 36 306 IPR001932 -
Gso1g1916 313 SUPERFAMILY PP2C-like 43 309 IPR036457 -
Gso1g1916 313 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1916 Gso-Chr1 55878387 55880136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1916 24 308 PP2C-type Phosphatase Gene Family AT2G29380 46.104 2.13e-77 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1916 K14497 - gmx:100785905 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1916 1 55878387 55880136 Gso1g1916 1 55878387 55880136 ECH