Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1915 ATGGAGGGAATGCGAGACAGAAACTCACAGCTTGAACTCCAAGACCAAGAGGGTACTAATATTGGGTCCTCTTTGTCAAAGCTGATATTAACAAGTGGCACAAACACCCTCGATTCAATTTTCTCGAATTGCCCCACAACAACAAATGGCAGCACTAGAAGCAACTCCGTGTTGGATTATTTAGAGCCCTTTGGGTCTTTGGGGTATGAGCCTTTGGGGTCTTCCGTGTACCTCCGCCAAAGGGACATCCTCCAAAAGTTCTACCAAGAAAGCCGAGGAAATGGGTCTTATAATGTTCCCACTTCCTCCTTGAGTAATTCGTTGACGAACCCTTGCAAGAAAAAGCTGTACAGGGGAGTGAGGCAGAGGCACTGGGGCAAATGGGTGGCGGAAATTAGACTCCCACAGAACAGGATGAGAGTGTGGTTGGGAACCTACGACACCGCCGAAGCTGCTGCCTACGCCTACGACCGCGCCGCGTACAAGCTCCGTGGAGAGTACGCGCGTTTGAACTTCCCCAATCTCAAGGACCCCACCAAGCTAGGTTTCGGTGACTCCGCCAGATTGAACGCCTTGAAGTCCTCCGTCGACGCCAAAATTCAAGCCATATGCCAGAAGGTCAAAAGGGAGAGAGCCAAAAAGAATGCCGCCAAGAAGCTTCACAATAGCACTGACCCTAAACGCGGCCAGAGTGAGAAGCCCTCCTCCTCGTCCTCGCCGTCGCCGTCGCCGTCGCCGTCGCCGTCGCCGTCGATTTTTAACGATAATTGGGCGAACCAGTTGTTTTCTCCGGCCGTTTCGGAGGATGGGTTTTGGAAGGGGGAGAATTCGCATTCGCCGGCCTCGGTTTTGACGGAGTGTCAAACAGAGGAAACAGAGTTGTTGTTCGAAGGTTGTTCTCTGGCTAGATTGCCTTCCTTCGACCCCGAGTTGATTTGGGAGGTTCTGACCGTTTAA 957 0.5214 MEGMRDRNSQLELQDQEGTNIGSSLSKLILTSGTNTLDSIFSNCPTTTNGSTRSNSVLDYLEPFGSLGYEPLGSSVYLRQRDILQKFYQESRGNGSYNVPTSSLSNSLTNPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSARLNALKSSVDAKIQAICQKVKRERAKKNAAKKLHNSTDPKRGQSEKPSSSSSPSPSPSPSPSPSIFNDNWANQLFSPAVSEDGFWKGENSHSPASVLTECQTEETELLFEGCSLARLPSFDPELIWEVLTV* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1915 318 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Gso1g1915 318 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Gso1g1915 318 CDD AP2 115 175 IPR001471 GO:0003700|GO:0006355
Gso1g1915 318 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Gso1g1915 318 SUPERFAMILY DNA-binding domain 116 173 IPR016177 GO:0003677
Gso1g1915 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 317 - -
Gso1g1915 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 317 - -
Gso1g1915 318 MobiDBLite consensus disorder prediction 209 254 - -
Gso1g1915 318 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Gso1g1915 318 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Gso1g1915 318 Gene3D AP2/ERF domain 116 174 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1915 Gso-Chr1 55863897 55865433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1915 19 316 AP2-EREBP Transcription Factor Family AT1G64380 46.903 2.92e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso1g1915 AP2 6.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1915 - - gmx:100785364 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1915 1 55863897 55865433 Gso1g1915 1 55863897 55865433 ECH