Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1913 ATGGAAAGCGACAGGAATTGGGAGCAGAACGCACTCATCAGTGAGCTAATTCAGGGGTTGGAGGTAGCAAGAAAGTTGAAGGAAGACTTGAGTTCAGCCTCTTCGGTTGACGCTAGGGACTCACACTCACTACTGCAGAGGATATTGTCTTCTTATGACAAGGCTTTGCTTTTTCTAAGATGGAATGAATCAGTGTCCATGCAACAACCAACTAAAACTTCTTCACCACAGTCACCACTATCCATTGACAAAACTCCTCTGAGGGAAGACGCTGAAGAAGATCATCAAGAACTTAAACACAATTCGAAGAAAAGAAAGATGATGCCGAAATGGACGGAACATATTAGAGTGAAGATCGAGAACGGCGTTGAAGGACCCCTCGAAGATGGTTACAGCTGGAGAAAATATGGACAAAAAGATATCCTTAGTGCAAAATATCCCAGAAGCTATTATAGGTGCACCTTCCGCAAAACAAAGGGGTGCTTTGCCACAAAGCAAGTGCAGAGATCAGAAGAAGACCACACTATCTTTGACATAACTTACCGAGGAAGTCACACATGTAAGCGAAACGATGCCGTTCTGCCGCCAAAGTCACCAGATTATACACAAGACGGCTCCTTGACTGTCAAAACGGATAACATAACGGCACCTTCCGCTTCGTTTGGATGCATGGCGCAAGATAACTACCACGACTTATTTCCTTCTTTGGTCTTAGAGAATGATCCATTTTTTAGCACCCTTTCCCAAACATCCTCGTTATCTGCAAACACACCTGAATCAAATTATTTTGTGTCTCCGACTTTCCTCGAACATGAATTCGATGGGGTCTGTAACAAGCCCTGCCCTGATTCTGAACTTGCCCGGCTGGTTTCAGCTGATACATCAATCACCAGTTCTCCAATTTTCGACTTTAATTTCTCGCTCGATGCAGTGGGAATTGATTATCCAAATTTCCCCTTCAATATATGA 969 0.4365 MESDRNWEQNALISELIQGLEVARKLKEDLSSASSVDARDSHSLLQRILSSYDKALLFLRWNESVSMQQPTKTSSPQSPLSIDKTPLREDAEEDHQELKHNSKKRKMMPKWTEHIRVKIENGVEGPLEDGYSWRKYGQKDILSAKYPRSYYRCTFRKTKGCFATKQVQRSEEDHTIFDITYRGSHTCKRNDAVLPPKSPDYTQDGSLTVKTDNITAPSASFGCMAQDNYHDLFPSLVLENDPFFSTLSQTSSLSANTPESNYFVSPTFLEHEFDGVCNKPCPDSELARLVSADTSITSSPIFDFNFSLDAVGIDYPNFPFNI* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1913 322 SUPERFAMILY WRKY DNA-binding domain 126 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g1913 322 Pfam WRKY DNA -binding domain 128 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g1913 322 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 321 IPR044810 GO:0003700
Gso1g1913 322 SMART WRKY_cls 127 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g1913 322 MobiDBLite consensus disorder prediction 85 101 - -
Gso1g1913 322 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 321 - -
Gso1g1913 322 MobiDBLite consensus disorder prediction 68 107 - -
Gso1g1913 322 Gene3D WRKY domain 113 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g1913 322 ProSiteProfiles WRKY domain profile. 122 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g1913 322 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1913 Gso-Chr1 55842036 55843963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1913 6 204 WRKY Transcription Factor Family AT4G23810 46.491 7.78e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso1g1913 WRKY 4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1913 - - gmx:100127370 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1913 1 55842036 55843963 Gso1g1913 1 55842036 55843963 ECH
Gso1g1913 1 55842036 55843963 Gso16g0218 16 2548225 2551457 ECH
Gso1g1913 1 55842036 55843963 Gso7g0510 7 5150137 5153078 ECH