Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1906 ATGACTGCGCCACCATCCAAGTACACTCACCACTCCAAACTACTCATTCCCTCCGAAGAAGACCCTCCCAAACACCCCTATCCCAGACTCGTCAGAATAACCGTCACAGACACCGAGGCCACAGACTCCTCCAGCGACGAAGAACAGCATACTTCCACGCGCCACCGACACAGAAAGTTCGTCAACGAGATTTCTATCGAGTCGTCGTGCGCCAGCGAGAACGACGGCGCCGCTTCGAGGAAGAGAATTCGAAGAAGAAGCACCGCTACGCCCAAAGGCAGAGCTTCAGACACTCGGCTCGTGTCCAACGGCAAGAAATTCCGCGGAGTGAGACAGCGGCCTTGGGGAAAATGGGCGGCGGAGATACGAGACCCGTCTCGACGCGTTCGTTTATGGTTGGGTACCTACGACACTGCTGAGGAAGCTGCTTTGGTGTACGACAACGCGGCCATTAGGCTGCGTGGACCCCACGCGCTCACCAATTTCATAACACCGCCTGCCACGTGTCACAACACAGACCCTCCGCCGGTGGCGAACGGTTACGGTTACGCTTCCGGTGAGGAAACTAATGACAACAACAATAACCTGTTTTCTCCCACTTCCGTGCTTCACAGTTGTTCCTTGTCCGAGGAAGCTGAGTCCGTAAGGGGAAAAGACGATGAGTACTCCTCCGTGTCGATGAGTAGGGTCAAGGCTGAGTCACCATTTCCGGTTCCGAGCGAAATAGAATTTGACTTTCGAGGTATTTCGCCGGTGCCTGAGAGTGTGTTGTTCTACGATGATGATTGGTCTAGTGAGTTTCTCACTGCTTGTGAGGATTTTGGTTTCAACAGAAATCGTGACTTTTTCCAAGATATCGACGATTTGTTTGTTTCGGATCCCCTCCTTGCTCTCTGA 897 0.5307 MTAPPSKYTHHSKLLIPSEEDPPKHPYPRLVRITVTDTEATDSSSDEEQHTSTRHRHRKFVNEISIESSCASENDGAASRKRIRRRSTATPKGRASDTRLVSNGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAALVYDNAAIRLRGPHALTNFITPPATCHNTDPPPVANGYGYASGEETNDNNNNLFSPTSVLHSCSLSEEAESVRGKDDEYSSVSMSRVKAESPFPVPSEIEFDFRGISPVPESVLFYDDDWSSEFLTACEDFGFNRNRDFFQDIDDLFVSDPLLAL* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1906 298 SUPERFAMILY DNA-binding domain 106 162 IPR016177 GO:0003677
Gso1g1906 298 MobiDBLite consensus disorder prediction 13 27 - -
Gso1g1906 298 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Gso1g1906 298 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Gso1g1906 298 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Gso1g1906 298 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 5 295 - -
Gso1g1906 298 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Gso1g1906 298 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Gso1g1906 298 MobiDBLite consensus disorder prediction 70 98 - -
Gso1g1906 298 MobiDBLite consensus disorder prediction 1 58 - -
Gso1g1906 298 MobiDBLite consensus disorder prediction 43 58 - -
Gso1g1906 298 CDD AP2 105 162 IPR001471 GO:0003700|GO:0006355
Gso1g1906 298 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 295 - -
Gso1g1906 298 MobiDBLite consensus disorder prediction 170 194 - -
Gso1g1906 298 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1906 Gso-Chr1 55777461 55778866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1906 1 298 AP2-EREBP Transcription Factor Family AT4G23750 39.181 1.71e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso1g1906 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1906 - - gmx:100783772 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1906 1 55777461 55778866 Gso1g1906 1 55777461 55778866 ECH