Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1905 ATGCAAGTTTCTGTGTGTCCGCTTCTGCTTTTTGGAGGTAAGTTGTCCGTCTCGTTGTTTGTTTTTGTTTTCCAGAAAACCAGTGGTGGTTGGCTTGAGTGTGTGCAGCAGAAGCAGCTGGTTCTCTGCTGGATGATGGAACGCATTTTGTGCTTCATCTACTTGGTTTCTCTCATTCTCTTCCAAGCAAATGCAGCAGAGCCCATCTCAGACAAGCAAGCATTGCTTGACTTGTTGGAAAAGTTGCCTCCTTCAAGATCCCTGAATTGGAACGCAAGCTCTTCCCCATGTACCTCCTGGACCGGTGTAACCTGTAATGGAGATAGGTCACGAGTTATAGCCATTCACTTGCCAGGTTTCGGGTTTCACGGAACCATCCCTCCCAACACAATAAGCCGCGTCACGGGGTTGCAAACACTCAGCCTCAGATCCAACTTCATAAATGGTCATTTCCCTTGTGATTTTTCCAATCTCAAAAACCTTTCCTTTCTCTATCTTCAGTATAACAACTTCACGGGTCCCTTACCGGACTTCTCTGCTTGGAGGAACCTCTCTGTTGTCAACTTGTCCAATAATTTTTTCACCGGCACCATTCCTCTCTCGCTCTCCAATTTGGCTCAGCTCACTGCCATGAATCTCGCCAACAACTCGCTCTCTGGGCAAATCCCTGTCTCTCTCCTCCAGAGGTTTCCCAACTCCGCATTCGTTGGAAACAATGTCTCTCTTGAAACCTCTCCTTTAGCTCCATTTTCTAAATCTGCAAAACACGGCGAGGCCACGGTGTTTTGGGTTATTGTTGCTGCTTCTCTTATTGGTCTCGCGGCATTTGTTGGTTTTATCTTTGTGTGCTGGTCGAGAAAGAAGAAGAATGGAGATTCATTTGCTCTGAAGTTGCAAAAGGTAGATATGTCTCCGGAAAAAGTAGTGTCGAGGGACCTGGATGCAAATAATAAAATTGTTTTCTTTGAGGGGTGTAGTTATGCGTTTGACTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTTTTGGGGAAGGGGACGTTTGGTGCTGCGTATAAGGCTGCGCTGGAGGATGCTACCACTGTTGTTGTGAAGAGGTTGAAGGAGGTGGCTGTTGGAAAGAAGGACTTTGACCAGCTCATGGAGGTTGTTGGGAATCTTAAACATGAGAATGTTGTTGAGCTGAAGGGGTATTACTATTCCAAAGATGAGAAACTCATGGTATATGATTACTACACTCAGGGGAGTCTCTCTGCTTTGTTGCATGGTAAAAGAGGAGAGGATAGGGTGCCTTTAGATTGGGATAATCGGATGAAAATTGCTTTGGGTGCTGCACGAGGCCTTGCTTGTATTCATTGTGAGAATGGGGGGAAGCTTGTACATGGCAATATCAGATCCTCAAATATCTTTCTCAATAGTAAACAATATGGTTGTGTATCTGATCTTGGCCTGGCAACCATAATGAGTTCAGTTGCCATACCGATCTCGCGAGCCGCTGGTTACAGAGCACCTGAAGTTACAGACACGAGGAAAGCGACTCAACCTTCTGATGTTTACAGCTTTGGTGTGGTGTTACTAGAGCTTCTCACTGGGAAATCCCCCGTCTACACAACTGGTAGCGATGAGATTGTGCACTTGGTGAGATGGGTTCATTCGGTTGTGAGAGAGGAGTGGACAGCTGAAGTGTTTGACTTAGAGCTGATAAGATATCCCAATATAGAGGAAGAGATGGTGGAAATGTTGCAGATAGCCATGTCATGTGTGGTGAGGGTTCCTGATCAGAGGCCTAAGATGTTAGAACTTGTAAAAATGATAGAAAATGTCAGGCAGATTGAGATAGTAGTGAATCAGCCATCAATATCATCTGAGAACCAAGTGGAAAGTTCAACACAGACCCCTTTAACCACTTAA 1908 0.4544 MQVSVCPLLLFGGKLSVSLFVFVFQKTSGGWLECVQQKQLVLCWMMERILCFIYLVSLILFQANAAEPISDKQALLDLLEKLPPSRSLNWNASSSPCTSWTGVTCNGDRSRVIAIHLPGFGFHGTIPPNTISRVTGLQTLSLRSNFINGHFPCDFSNLKNLSFLYLQYNNFTGPLPDFSAWRNLSVVNLSNNFFTGTIPLSLSNLAQLTAMNLANNSLSGQIPVSLLQRFPNSAFVGNNVSLETSPLAPFSKSAKHGEATVFWVIVAASLIGLAAFVGFIFVCWSRKKKNGDSFALKLQKVDMSPEKVVSRDLDANNKIVFFEGCSYAFDLEDLLRASAEVLGKGTFGAAYKAALEDATTVVVKRLKEVAVGKKDFDQLMEVVGNLKHENVVELKGYYYSKDEKLMVYDYYTQGSLSALLHGKRGEDRVPLDWDNRMKIALGAARGLACIHCENGGKLVHGNIRSSNIFLNSKQYGCVSDLGLATIMSSVAIPISRAAGYRAPEVTDTRKATQPSDVYSFGVVLLELLTGKSPVYTTGSDEIVHLVRWVHSVVREEWTAEVFDLELIRYPNIEEEMVEMLQIAMSCVVRVPDQRPKMLELVKMIENVRQIEIVVNQPSISSENQVESSTQTPLTT* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1905 635 SUPERFAMILY Protein kinase-like (PK-like) 340 604 IPR011009 -
Gso1g1905 635 Pfam Leucine rich repeat N-terminal domain 70 106 IPR013210 -
Gso1g1905 635 ProSitePatterns Protein kinases ATP-binding region signature. 342 373 IPR017441 GO:0005524
Gso1g1905 635 Gene3D Transferase(Phosphotransferase) domain 1 412 626 - -
Gso1g1905 635 ProSiteProfiles Protein kinase domain profile. 336 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1905 635 Pfam Protein kinase domain 339 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1905 635 Gene3D Ribonuclease Inhibitor 70 179 IPR032675 -
Gso1g1905 635 Gene3D Ribonuclease Inhibitor 180 234 IPR032675 -
Gso1g1905 635 Gene3D Phosphorylase Kinase; domain 1 304 410 - -
Gso1g1905 635 SUPERFAMILY L domain-like 81 233 - -
Gso1g1905 635 PANTHER PROTEIN, PUTATIVE-RELATED 62 618 - -
Gso1g1905 635 PANTHER OS05G0588300 PROTEIN 62 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1905 Gso-Chr1 55760719 55764420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1905 59 632 Receptor kinase-like Gene Family AT4G23740 60.645 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso1g1905 Pkinase 2.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1905 - - gmx:100783234 1254.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1905 1 55760719 55764420 Gso1g1905 1 55760719 55764420 ECH