Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1897 ATGCGTCAAAAACCGAACGTTCGATTGAGTCATCAAAGTCATATGGTTTCACGTTTCAGTCCTGATCGAGTAAACACCAAGAAGCAGCAGCGCAGTAACGACACCGTTTCGATGGGGAACTGTAACAGCGAAGCCTCTTCCCAAACTCAGCCACATTCCGATCACCATCCCCAACCACGCTCCAACTCCAACGGCATCACCGTCCTTCCTCCCAATTCGAAGCCCTCCGTTGGCCGGGTCTTGGGCCGGCCCATGGAGGACGTCCGCTCCACCTACACCTTCGGCCGCGAACTGGGCCGCGGCCAATTCGGCGTGACATACCTTGTGACCCACAAACACACCAAACAACAATTCGCGTGCAAATCCATCGCCACGCCCAAACTCGTCCACCGCGACGACTTGGAGGATGTCCGGCGAGAGGTGCAGATCATGCACCACCTCACCGGCCACCGCAACATCGTGGAGCTCAAGGGCGCTTACGAGGACCGCCACTCCGTTAACCTCATCATGGAGCTCTGCGGCGGCGGCGAGCTCTTCGACCGGATCATTGCCAAGGGCCACTACTCCGAGCGCGCCGCCGCCGACCTCTGCCGCCAGATCGTGACGGTGGTCCACGATTGCCACACCATGGGAGTGATGCACAGGGATCTCAAGCCAGAGAACTTCCTGTTCCTCAGCAAGGACGAGAACTCGCCGCTTAAGGCCACGGACTTCGGTCTCTCCGTGTTCTTCAAGCCCGGCGACGTGTTTAAGGATCTTGTCGGGAGTGCGTACTATGTTGCTCCTGAGGTGCTGCGTAGAAGCTATGGACCCGAAGCTGATATTTGGAGTGCTGGGGTTATATTGTTCATTTTGCTCTCCGGTGTCCCTCCCTTCTGGTCAAAAAAGGAACAAGGTATCTTTGATGCTATTCTTCGTGGCCATATTGATTTCACATCAGATCCTTGGCCTTCCATATCGAGTAGTGCCAAAGATCTGGTCAAGAAGATGTTACGAGCTGACCCCAAACAAAGGCTCTCAGCAGTTGAAGTCCTTGATCATCCTTGGATGAGAGAAGATGGAGCATCTGATAAGCCTCTAGATGTTGCTGTTTTATCCAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTTGCTCTGAAGGTTATTGCTGAAAACCTTTCTGAAGAAGAAATCATTGGCTTGAAGGAAATGTTTAAATCCATGGACACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTGCCAAAACTGGGTACTAAGGTTTCTGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCTGATGTAGACGGAAATGGGACCATTGATTACATTGAATTTATAACAGCTACCATGCACATGAATAGAATGGAAAGAGAGGACCACCTATATAAAGCTTTTGAATATTTTGACAAGGATAGAAGCGGGTACATCACAATGGAAGAGTTGGAATCTACCCTTAAAAAATATAATATGGGTGATGAGAAAACAATAAAGGAAATCATTGTGGAAGTCGATACAGACAATGATGGAAGAATTAATTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAAACCAGATTTAGTAACCAACAGACGTCGCAAATGA 1629 0.4911 MRQKPNVRLSHQSHMVSRFSPDRVNTKKQQRSNDTVSMGNCNSEASSQTQPHSDHHPQPRSNSNGITVLPPNSKPSVGRVLGRPMEDVRSTYTFGRELGRGQFGVTYLVTHKHTKQQFACKSIATPKLVHRDDLEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCGGGELFDRIIAKGHYSERAAADLCRQIVTVVHDCHTMGVMHRDLKPENFLFLSKDENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILFILLSGVPPFWSKKEQGIFDAILRGHIDFTSDPWPSISSSAKDLVKKMLRADPKQRLSAVEVLDHPWMREDGASDKPLDVAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKVSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDKDRSGYITMEELESTLKKYNMGDEKTIKEIIVEVDTDNDGRINYDEFVAMMRKGKPDLVTNRRRK* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1897 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Gso1g1897 542 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Gso1g1897 542 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 534 - -
Gso1g1897 542 SUPERFAMILY Protein kinase-like (PK-like) 89 361 IPR011009 -
Gso1g1897 542 MobiDBLite consensus disorder prediction 30 71 - -
Gso1g1897 542 SMART serkin_6 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1897 542 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Gso1g1897 542 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Gso1g1897 542 SMART efh_1 468 496 IPR002048 GO:0005509
Gso1g1897 542 SMART efh_1 432 460 IPR002048 GO:0005509
Gso1g1897 542 SMART efh_1 503 531 IPR002048 GO:0005509
Gso1g1897 542 SMART efh_1 396 424 IPR002048 GO:0005509
Gso1g1897 542 ProSiteProfiles EF-hand calcium-binding domain profile. 499 534 IPR002048 GO:0005509
Gso1g1897 542 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Gso1g1897 542 SUPERFAMILY EF-hand 388 529 IPR011992 -
Gso1g1897 542 Pfam Protein kinase domain 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1897 542 ProSiteProfiles EF-hand calcium-binding domain profile. 464 498 IPR002048 GO:0005509
Gso1g1897 542 CDD STKc_CAMK 92 349 - -
Gso1g1897 542 Gene3D Transferase(Phosphotransferase) domain 1 178 368 - -
Gso1g1897 542 ProSitePatterns EF-hand calcium-binding domain. 512 524 IPR018247 -
Gso1g1897 542 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 1 41 534 - -
Gso1g1897 542 MobiDBLite consensus disorder prediction 1 84 - -
Gso1g1897 542 Coils Coil 541 542 - -
Gso1g1897 542 ProSiteProfiles Protein kinase domain profile. 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1897 542 Gene3D - 375 528 - -
Gso1g1897 542 MobiDBLite consensus disorder prediction 8 23 - -
Gso1g1897 542 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Gso1g1897 542 Pfam EF-hand domain pair 467 529 IPR002048 GO:0005509
Gso1g1897 542 Pfam EF-hand domain pair 397 457 IPR002048 GO:0005509
Gso1g1897 542 Gene3D Phosphorylase Kinase; domain 1 94 177 - -
Gso1g1897 542 Gene3D - 369 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1897 Gso-Chr1 55691546 55696848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1897 78 541 EF-hand Containing Proteins AT4G23650 82.151 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso1g1897 Pkinase 4.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1897 K13412 - gmx:100808536 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1897 1 55691546 55696848 Gso1g1897 1 55691546 55696848 ECH